Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL20_RS02250 Genome accession   NZ_LS483444
Coordinates   395865..397829 (+) Length   654 a.a.
NCBI ID   WP_006594958.1    Uniprot ID   E7S7H1
Organism   Streptococcus australis strain NCTC13166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 390865..402829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS02230 (NCTC11371_00440) sufU 391798..392232 (+) 435 WP_006594962.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQL20_RS02235 (NCTC11371_00441) sufB 392377..393789 (+) 1413 WP_006594961.1 Fe-S cluster assembly protein SufB -
  DQL20_RS02240 (NCTC11371_00442) - 393810..394382 (+) 573 WP_006594960.1 hypothetical protein -
  DQL20_RS02245 (NCTC11371_00443) pbp3 394448..395689 (-) 1242 WP_006594959.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL20_RS02250 (NCTC11371_00444) amiA3 395865..397829 (+) 1965 WP_006594958.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02255 (NCTC11371_00445) amiA3 398021..400006 (+) 1986 WP_006594957.1 peptide ABC transporter substrate-binding protein Regulator
  DQL20_RS02260 (NCTC11371_00446) amiC 400071..401570 (+) 1500 WP_006594956.1 ABC transporter permease Regulator
  DQL20_RS02265 (NCTC11371_00447) amiD 401570..402496 (+) 927 WP_006594955.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72623.57 Da        Isoelectric Point: 4.7697

>NTDB_id=1141723 DQL20_RS02250 WP_006594958.1 395865..397829(+) (amiA3) [Streptococcus australis strain NCTC13166]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAHDFVTGIKHAVESKSEGLFLIQNSIKGLDAYAKGETTDFKTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNAAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDNVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKNVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVEFPIHIDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPAITAVEFGKYAELLKDANAEVSDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1141723 DQL20_RS02250 WP_006594958.1 395865..397829(+) (amiA3) [Streptococcus australis strain NCTC13166]
ATGAAAGTAAATAAACGGTTCGTACTGGCCGGTGTTTCTCTGGCCAGCGCTCTTCTATTGACAGCCTGCGGTGGTGGAAG
CAGCAATCAATCTACTTATTCTTATATTTATTCAACAGATCCAAATACATTGGACTACATTGCATCGACTCGTACAACGA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACAGTTTCAGAAGACGGCTTGGTCTATACCTATAAACTTCGAAAAGATGCCAAATGGTACACCAGTGAAGGAGA
AGAGTATGGTGCTGTAACAGCTCACGATTTTGTGACAGGGATCAAACATGCTGTGGAATCAAAATCTGAAGGTCTCTTCT
TAATCCAAAACTCCATTAAAGGTTTGGATGCCTATGCCAAGGGTGAAACAACAGATTTTAAGACGGTTGGCGTGAAAGCC
CTAGATGATTACACCGTTCAATATACCTTGGAACGTCCAGAAAGCTTTTGGAATTCTAAGACGACATCAGGCGTCCTTTT
CCCAGTTAACGCAGCTTTCTTAGAATCTCAAGGAAAAGACTTTGGTTCCTTGAAACCAAGTAGTATTCTCTATAACGGTC
CATATTATTTGAAGAATTTAACTTCAAAATCTCAAATTGAGCTTGTAAAAAATAAAGAATACTATGATGAAAAGAATGTT
CATATTGATAATGTGAAGTTGACCTACAATGACGGGTCAGATCCAGAATCTGTTATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACAGTAATGCCAAATAGCTCCACTTATAAGAATGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATACGGAACATCATACTACCTAGGCTTCAACATTGATCGTCAGAAGTATAACCATACAGCTAAAACGACAGATGCT
CAAAAATCGTCTACAAAACAAGCGATTTTAAACAAGGATTTCCGTCAAGCCGTCAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCTGGTGCGGATGCGGCGACCAAGATTCTTCGAAACACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGTGAAGAGTTCGGTAAGGTTGTTGAGAAGCAATTAGTGACCTATGGAGATGAGTGGAAAGATGTAAACCTAGATGAT
GCCCAAACCACTCTCTATAATCAAGAGAAAGCCAAAGCTGAGTTTGCAAAAGCCAAAGAACAACTACAAAAAGAAGGGGT
AGAATTCCCAATTCATATAGATTACGTTGTTAGTCAGACAGATAACAGCCAGGTACAACAAGCTAGCTCCTTCAAACAAT
CCGTAGAAGCTGTTCTCGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAATATTACC
TACTTTACTGACACTGCTGCTGAGAAAGATTATGACCTTGCAGGTGGAGGATGGGTGCCTGACTATCAAGATCCATCTAC
TTATTTAGAGAGTTTAAGTCCTGTTAATGGTTCTGTTTTCTACTATCTAGGTGTGGATGCAGGATCAAATAGCCCTGCTA
TTACAGCGGTTGAATTTGGGAAATATGCAGAACTCTTAAAAGATGCCAATGCAGAAGTGAGTGACCAAGCTGTACGTTAT
GAGAAATACGCAGCTGCTCAAGCCTGGCTAACCGATAGTTCGTTGATCTTGCCAACTGTTTCAAATGGTGGAACGCCAAT
GTTGCAACGGACTGTCCCATATAGTCGTGCGGCTTCATGGGTTGGAACAAAAGGTACAGGAACCAACTATAAATATCTTG
AGCTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGTAAAGAAAAATGGTTGAAAGAAAAGGCTGAATCCAAT
AAAAAAGCCCAAGAAGAATTAAAGAACCACATCGAATCGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7S7H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.485

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.03

100

0.535
  amiA Streptococcus salivarius strain HSISS4

52.656

100

0.531

Multiple sequence alignment