Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQN45_RS03700 | Genome accession | NZ_LS483438 |
| Coordinates | 727350..727799 (+) | Length | 149 a.a. |
| NCBI ID | WP_042593498.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC12975 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 722350..732799
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN45_RS03680 (NCTC12975_00735) | rsmE | 722813..723550 (-) | 738 | WP_005654099.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| DQN45_RS03685 (NCTC12975_00736) | lnt | 723600..725129 (-) | 1530 | WP_080317215.1 | apolipoprotein N-acyltransferase | - |
| DQN45_RS03690 (NCTC12975_00737) | corC | 725152..726051 (-) | 900 | WP_042593501.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DQN45_RS03695 (NCTC12975_00738) | ampD | 726684..727235 (-) | 552 | WP_042593499.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQN45_RS03700 (NCTC12975_00739) | pilA | 727350..727799 (+) | 450 | WP_042593498.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQN45_RS03705 (NCTC12975_00740) | pilB | 727796..729190 (+) | 1395 | WP_011271972.1 | GspE/PulE family protein | Machinery gene |
| DQN45_RS03710 (NCTC12975_00741) | pilC | 729187..730404 (+) | 1218 | WP_014550481.1 | type II secretion system F family protein | Machinery gene |
| DQN45_RS03715 (NCTC12975_00742) | pilD | 730401..731093 (+) | 693 | WP_014550482.1 | A24 family peptidase | Machinery gene |
| DQN45_RS03720 (NCTC12975_00743) | rho | 731147..732409 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15464.84 Da Isoelectric Point: 8.7944
>NTDB_id=1141560 DQN45_RS03700 WP_042593498.1 727350..727799(+) (pilA) [Haemophilus influenzae strain NCTC12975]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=1141560 DQN45_RS03700 WP_042593498.1 727350..727799(+) (pilA) [Haemophilus influenzae strain NCTC12975]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
93.96 |
100 |
0.94 |
| pilA | Haemophilus influenzae Rd KW20 |
88.591 |
100 |
0.886 |
| pilA | Glaesserella parasuis strain SC1401 |
56.376 |
100 |
0.564 |
| pilA2 | Legionella pneumophila str. Paris |
39.189 |
99.329 |
0.389 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.189 |
99.329 |
0.389 |
| pilA | Vibrio campbellii strain DS40M4 |
38.298 |
94.631 |
0.362 |