Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DQN45_RS03715 Genome accession   NZ_LS483438
Coordinates   730401..731093 (+) Length   230 a.a.
NCBI ID   WP_014550482.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12975     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 725401..736093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS03695 (NCTC12975_00738) ampD 726684..727235 (-) 552 WP_042593499.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DQN45_RS03700 (NCTC12975_00739) pilA 727350..727799 (+) 450 WP_042593498.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DQN45_RS03705 (NCTC12975_00740) pilB 727796..729190 (+) 1395 WP_011271972.1 GspE/PulE family protein Machinery gene
  DQN45_RS03710 (NCTC12975_00741) pilC 729187..730404 (+) 1218 WP_014550481.1 type II secretion system F family protein Machinery gene
  DQN45_RS03715 (NCTC12975_00742) pilD 730401..731093 (+) 693 WP_014550482.1 A24 family peptidase Machinery gene
  DQN45_RS03720 (NCTC12975_00743) rho 731147..732409 (-) 1263 WP_005648966.1 transcription termination factor Rho -
  DQN45_RS03725 (NCTC12975_00744) metJ 732657..732974 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  DQN45_RS03730 (NCTC12975_00745) cueR 732988..733374 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  DQN45_RS03735 (NCTC12975_00746) - 733451..733657 (+) 207 WP_005666692.1 heavy-metal-associated domain-containing protein -
  DQN45_RS03740 (NCTC12975_00747) - 733743..733949 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  DQN45_RS03745 (NCTC12975_00748) - 734023..734229 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26683.67 Da        Isoelectric Point: 8.5626

>NTDB_id=1141563 DQN45_RS03715 WP_014550482.1 730401..731093(+) (pilD) [Haemophilus influenzae strain NCTC12975]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLNVGVEFIFLQIAF
KDSTFAIWLGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1141563 DQN45_RS03715 WP_014550482.1 730401..731093(+) (pilD) [Haemophilus influenzae strain NCTC12975]
ATGATTTACTTCACAATGTTTTTATTAGGCGGTATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAATGTTGGGGTAGAATTTATATTTTTACAAATTGCCTTC
AAGGACTCTACTTTCGCTATATGGCTAGGGCTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGAGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATCATTTATTTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

89.565

100

0.896
  pilD Haemophilus influenzae Rd KW20

89.13

100

0.891

Multiple sequence alignment