Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DQO04_RS22700 Genome accession   NZ_LS483433
Coordinates   4907496..4908704 (+) Length   402 a.a.
NCBI ID   WP_084376375.1    Uniprot ID   -
Organism   Pseudomonas mucidolens strain NCTC8068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4902496..4913704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQO04_RS22675 (NCTC8068_04501) nadC 4903870..4904718 (+) 849 WP_084376372.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DQO04_RS22680 (NCTC8068_04502) - 4904791..4905096 (-) 306 WP_084376373.1 DUF6388 family protein -
  DQO04_RS22690 (NCTC8068_04504) - 4905344..4906762 (-) 1419 WP_090221338.1 O-antigen ligase -
  DQO04_RS22695 (NCTC8068_04505) - 4906833..4907246 (-) 414 WP_084376514.1 pilin -
  DQO04_RS22700 (NCTC8068_04506) pilC 4907496..4908704 (+) 1209 WP_084376375.1 type II secretion system F family protein Machinery gene
  DQO04_RS22705 (NCTC8068_04507) pilD 4908707..4909579 (+) 873 WP_084376376.1 A24 family peptidase Machinery gene
  DQO04_RS22710 (NCTC8068_04508) coaE 4909576..4910199 (+) 624 WP_084376377.1 dephospho-CoA kinase -
  DQO04_RS22715 (NCTC8068_04509) yacG 4910196..4910396 (+) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  DQO04_RS22720 (NCTC8068_04510) - 4910393..4910608 (-) 216 WP_084376378.1 hypothetical protein -
  DQO04_RS22725 (NCTC8068_04511) - 4910672..4911361 (-) 690 WP_084376379.1 energy-coupling factor ABC transporter permease -
  DQO04_RS22730 (NCTC8068_04512) - 4911590..4912220 (+) 631 Protein_4416 DUF1780 domain-containing protein -
  DQO04_RS22735 (NCTC8068_04513) - 4912372..4912545 (+) 174 WP_084376381.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43411.15 Da        Isoelectric Point: 10.2785

>NTDB_id=1141370 DQO04_RS22700 WP_084376375.1 4907496..4908704(+) (pilC) [Pseudomonas mucidolens strain NCTC8068]
MTTAPTTYTWEGTLHNGRKVAGETSGYNPALIKAQLRRQGIIPGRVRVKSNRLSSLASPIRPADIALFTRQLATLLRAGI
PMLQAFDIIGDGFDNRHMRVLVQALKQDIAAGSNLSLALLKRPRYFDTLYCNLIAAGEQAGALETLLERVAIHLEKSEQL
KARIKKAMTYPLVVLIVAIVVSGILLIHVVPQFQGLFAGIDAPLPGFTLTVIALSAFIQHAWWMLLMAVFAGVFSLRHGY
ARSPAFRLWLDASLLKVPLAGTLLKKSAVARYARTLSTTFSAGVPLAQALDSVAGATGNGLFKQAIKRMREDVATGMQLS
QGMAASGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDSLTSLMEPLIMVVLGSIVAALVIAMYLPIFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1141370 DQO04_RS22700 WP_084376375.1 4907496..4908704(+) (pilC) [Pseudomonas mucidolens strain NCTC8068]
ATGACCACCGCGCCCACGACCTACACTTGGGAAGGCACCCTGCACAACGGCCGTAAAGTCGCTGGCGAAACCAGTGGCTA
CAACCCCGCGCTGATCAAGGCACAGCTACGTCGCCAGGGCATCATCCCTGGCCGGGTCCGAGTGAAGTCGAACCGCCTGT
CGAGCCTCGCCAGCCCCATCCGTCCCGCCGACATCGCACTCTTCACCCGACAGCTGGCCACGCTGCTGAGAGCCGGAATC
CCCATGCTGCAAGCATTCGATATCATCGGTGACGGTTTCGACAACCGGCACATGCGCGTATTGGTGCAGGCGCTGAAGCA
GGACATCGCCGCCGGTAGCAATCTGTCTCTCGCGCTGCTGAAAAGGCCACGGTACTTCGATACATTGTATTGCAACCTGA
TCGCGGCCGGCGAACAGGCCGGCGCGCTCGAAACCCTGCTGGAACGCGTAGCGATTCATCTGGAAAAGAGCGAGCAACTC
AAGGCCAGGATCAAGAAAGCCATGACCTATCCGTTGGTTGTCCTGATCGTAGCCATCGTCGTCAGCGGTATTCTGCTGAT
CCACGTCGTGCCGCAGTTTCAAGGGCTGTTTGCCGGCATCGATGCGCCCTTGCCGGGGTTCACCTTGACGGTTATCGCGC
TGTCCGCGTTCATCCAGCATGCCTGGTGGATGCTGCTCATGGCAGTGTTTGCCGGTGTTTTCAGCCTGCGCCACGGTTAT
GCTCGCTCGCCCGCATTTCGCTTATGGCTGGATGCCAGTTTGTTGAAAGTGCCGCTGGCAGGCACACTGCTGAAAAAGTC
GGCCGTGGCCCGTTATGCGCGCACGCTCTCGACGACTTTTTCGGCCGGAGTGCCGTTGGCGCAAGCATTGGATTCGGTGG
CAGGAGCCACCGGTAACGGGTTATTCAAACAGGCAATCAAGCGTATGCGTGAAGACGTGGCCACAGGGATGCAATTGAGC
CAAGGCATGGCAGCCAGCGGCCTGTTTCCCGGCATGGCAATTCAGATGACAGCCATCGGCGAGGAGTCCGGCACCCTCGA
TCGCATGCTGGAAAAGGTCGCCAATCACTACGAGGCGGATGTCGATAACCTGGTGGACAGCCTGACCAGCCTCATGGAGC
CCCTGATCATGGTGGTGCTCGGCAGTATTGTCGCAGCCCTGGTAATCGCCATGTACCTGCCGATCTTCCAACTCGGCACG
GCATTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.343

98.507

0.585
  pilC Acinetobacter baumannii D1279779

51.263

98.507

0.505
  pilC Acinetobacter baylyi ADP1

50.633

98.259

0.498
  pilC Legionella pneumophila strain ERS1305867

47.475

98.507

0.468
  pilG Neisseria gonorrhoeae MS11

41.058

98.756

0.405
  pilG Neisseria meningitidis 44/76-A

40.806

98.756

0.403
  pilC Vibrio cholerae strain A1552

39.698

99.005

0.393
  pilC Vibrio campbellii strain DS40M4

38.75

99.502

0.386

Multiple sequence alignment