Detailed information NTG1141371

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DQO04_RS22705
• Genome accession: NZ_LS483433
• Coordinates: 4908707..4909579 (+)
• Length: 290 a.a.
• NCBI ID: WP_084376376.1
• Uniprot ID: -
• Organism: Pseudomonas mucidolens strain NCTC8068
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4903707..4914579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQO04_RS22675 (NCTC8068_04501)	nadC	4903870..4904718 (+)	849	WP_084376372.1	carboxylating nicotinate-nucleotide diphosphorylase	-
DQO04_RS22680 (NCTC8068_04502)	-	4904791..4905096 (-)	306	WP_084376373.1	DUF6388 family protein	-
DQO04_RS22690 (NCTC8068_04504)	-	4905344..4906762 (-)	1419	WP_090221338.1	O-antigen ligase	-
DQO04_RS22695 (NCTC8068_04505)	-	4906833..4907246 (-)	414	WP_084376514.1	pilin	-
DQO04_RS22700 (NCTC8068_04506)	pilC	4907496..4908704 (+)	1209	WP_084376375.1	type II secretion system F family protein	Machinery gene
DQO04_RS22705 (NCTC8068_04507)	pilD	4908707..4909579 (+)	873	WP_084376376.1	A24 family peptidase	Machinery gene
DQO04_RS22710 (NCTC8068_04508)	coaE	4909576..4910199 (+)	624	WP_084376377.1	dephospho-CoA kinase	-
DQO04_RS22715 (NCTC8068_04509)	yacG	4910196..4910396 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
DQO04_RS22720 (NCTC8068_04510)	-	4910393..4910608 (-)	216	WP_084376378.1	hypothetical protein	-
DQO04_RS22725 (NCTC8068_04511)	-	4910672..4911361 (-)	690	WP_084376379.1	energy-coupling factor ABC transporter permease	-
DQO04_RS22730 (NCTC8068_04512)	-	4911590..4912220 (+)	631	Protein_4416	DUF1780 domain-containing protein	-
DQO04_RS22735 (NCTC8068_04513)	-	4912372..4912545 (+)	174	WP_084376381.1	DUF3094 family protein	-
DQO04_RS22740 (NCTC8068_04514)	-	4912606..4913904 (+)	1299	WP_084376382.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31894.84 Da
• Isoelectric Point: 6.9294

>NTDB_id=1141371 DQO04_RS22705 WP_084376376.1 4908707..4909579(+) (pilD) [Pseudomonas mucidolens strain NCTC8068]
MTLSQLLSLQPWVFISTALVLGLIVGSFLNVLTWRLPTMLERDWRAQARDILGLDPEPVGPPYNLMHPNSCCPHCAQPIR
PWENIPLLSYLLLKGRCAHCKAPISARYPLTELACGLISGFIAWHFGFGWTAGAVLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNSFELFTSLPDALWGAIAGYLSLWSVFWVFKLITGKDGMGQGDFKLLAMLGAWGGWQILPMTLLLASLVG
AVSGLVLLRLRDAQTSTPLPFGPYLATAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1141371 DQO04_RS22705 WP_084376376.1 4908707..4909579(+) (pilD) [Pseudomonas mucidolens strain NCTC8068]
ATGACACTGAGCCAATTGCTGAGCCTGCAACCCTGGGTATTCATATCCACCGCGCTGGTGCTCGGTTTGATCGTCGGCAG
CTTCCTCAATGTGCTGACATGGCGCCTGCCGACAATGCTGGAGCGGGATTGGCGTGCCCAGGCCCGTGACATCCTCGGAC
TTGATCCGGAACCGGTCGGCCCGCCCTACAACCTGATGCACCCCAACTCTTGCTGCCCCCATTGCGCCCAACCGATTCGC
CCCTGGGAAAATATCCCGCTGCTCAGTTATCTGTTGCTTAAAGGTCGCTGCGCGCATTGCAAAGCCCCCATCAGTGCGCG
CTACCCCCTTACCGAACTGGCTTGCGGGCTGATTTCGGGGTTTATTGCCTGGCATTTCGGTTTCGGCTGGACGGCAGGCG
CCGTGTTGCTGTTGAGCTGGGGGTTGCTGGCCATGAGCCTGATTGATGCCGATCACCAGTTGTTGCCCGATGTGCTGGTT
CTGCCCCTGCTGTGGCTCGGGTTGATCCTCAACTCTTTTGAGCTGTTCACCTCATTGCCAGACGCGCTGTGGGGCGCCAT
CGCCGGCTATCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGAAAGGACGGCATGGGGCAAGGGGATT
TCAAACTGCTGGCAATGCTCGGTGCCTGGGGCGGCTGGCAAATCCTGCCGATGACACTGTTGCTGGCTTCGCTGGTCGGC
GCCGTCTCGGGGCTGGTCCTGCTGCGTCTGCGCGACGCCCAGACGTCCACGCCGCTACCTTTTGGCCCTTATCTGGCCAC
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.225	97.931	0.531
pilD	Vibrio campbellii strain DS40M4	50.175	98.276	0.493
pilD	Acinetobacter nosocomialis M2	49.455	94.828	0.469
pilD	Acinetobacter baumannii D1279779	49.091	94.828	0.466
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445