Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DQN96_RS17090 Genome accession   NZ_LS483406
Coordinates   3644972..3646231 (+) Length   419 a.a.
NCBI ID   WP_100438366.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain NCTC10498     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639972..3651231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN96_RS17070 (NCTC10498_03404) pilR 3640174..3641547 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  DQN96_RS17075 (NCTC10498_03405) pilB 3641673..3643406 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DQN96_RS17080 (NCTC10498_03406) - 3643629..3644036 (-) 408 WP_100438364.1 pilin -
  DQN96_RS17085 (NCTC10498_03407) - 3644188..3644619 (-) 432 WP_100438365.1 pilin -
  DQN96_RS17090 (NCTC10498_03408) pilC 3644972..3646231 (+) 1260 WP_100438366.1 type II secretion system F family protein Machinery gene
  DQN96_RS17095 (NCTC10498_03409) - 3646239..3647102 (+) 864 WP_005410800.1 A24 family peptidase -
  DQN96_RS17100 (NCTC10498_03410) coaE 3647114..3647725 (+) 612 WP_100438367.1 dephospho-CoA kinase -
  DQN96_RS17105 (NCTC10498_03411) - 3647991..3648302 (-) 312 Protein_3308 hypothetical protein -
  DQN96_RS17110 (NCTC10498_03412) - 3648785..3650152 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  DQN96_RS17115 (NCTC10498_03413) - 3650115..3650792 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45922.38 Da        Isoelectric Point: 10.1408

>NTDB_id=1140420 DQN96_RS17090 WP_100438366.1 3644972..3646231(+) (pilC) [Stenotrophomonas maltophilia strain NCTC10498]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1140420 DQN96_RS17090 WP_100438366.1 3644972..3646231(+) (pilC) [Stenotrophomonas maltophilia strain NCTC10498]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAACTTCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGATCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGCATGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGTGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACGGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

94.511

0.523
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

50.126

94.749

0.475
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

37.811

95.943

0.363

Multiple sequence alignment