Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM95_RS09640 Genome accession   NZ_LS483397
Coordinates   1901205..1902476 (-) Length   423 a.a.
NCBI ID   WP_037593113.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC3858     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896205..1907476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM95_RS09610 (NCTC3858_01954) - 1896434..1897996 (-) 1563 WP_037593119.1 membrane protein -
  DQM95_RS09615 (NCTC3858_01955) - 1898152..1898457 (-) 306 WP_015912065.1 DUF1292 domain-containing protein -
  DQM95_RS09620 (NCTC3858_01956) ruvX 1898468..1898887 (-) 420 WP_015912066.1 Holliday junction resolvase RuvX -
  DQM95_RS09625 (NCTC3858_01957) - 1898884..1899153 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  DQM95_RS09630 (NCTC3858_01958) spx 1899269..1899667 (-) 399 WP_015912067.1 transcriptional regulator Spx -
  DQM95_RS09635 (NCTC3858_01959) recA 1899984..1901123 (-) 1140 WP_015912068.1 recombinase RecA Machinery gene
  DQM95_RS09640 (NCTC3858_01960) cinA 1901205..1902476 (-) 1272 WP_037593113.1 competence/damage-inducible protein A Machinery gene
  DQM95_RS09645 (NCTC3858_01961) - 1902567..1903121 (-) 555 WP_037593111.1 DNA-3-methyladenine glycosylase I -
  DQM95_RS09650 (NCTC3858_01962) ruvA 1903126..1903719 (-) 594 WP_037593109.1 Holliday junction branch migration protein RuvA -
  DQM95_RS09655 (NCTC3858_01963) - 1903721..1904944 (-) 1224 WP_111686018.1 MFS transporter -
  DQM95_RS09660 (NCTC3858_01964) mutL 1904954..1906936 (-) 1983 WP_111686019.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45580.25 Da        Isoelectric Point: 6.1834

>NTDB_id=1140188 DQM95_RS09640 WP_037593113.1 1901205..1902476(-) (cinA) [Streptococcus uberis strain NCTC3858]
MKAEIIAVGTELLTGQVLNTNAQFLSEKMAEIGVDVFFQTAVGDNESRLLNLLDIASQRSDLILLCGGLGPTEDDLTKQT
VASFLGKSLVFEPSASQKLDHFFASRPHYSRTPNNERQAQIIEGSTPIPNITGLAVGGILEVDGVTYVLLPGPPSELKPM
VNQYLLPVLSGNHTALYSRVLRFFGIGESQLVTILSEMIHKQSDPTIAPYAKIGEVTLRLSTKAETPEQAKAKLDGLEQK
ILQTPSFEGGLLADYHYGYGETNSLSAEVVNMLKERSMTITAAESLTAGLFQSTIADFPGSSKLFRGGFVTYHIEEKAKM
LQLQLSDLELHGVVSAFTAKKMAEQSRHLTASDIGVGLTGVAGPDALEGHNVGTVFIGIATLKGAKSYKVSIGGRSRSDI
RYIACLHAFDLVRKTLLNGLNLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1140188 DQM95_RS09640 WP_037593113.1 1901205..1902476(-) (cinA) [Streptococcus uberis strain NCTC3858]
ATGAAAGCTGAAATAATAGCAGTTGGAACAGAATTGTTAACAGGACAAGTTTTAAATACGAATGCGCAATTTTTATCTGA
AAAAATGGCTGAGATTGGAGTTGATGTTTTTTTTCAAACAGCTGTGGGTGATAATGAATCTCGCTTACTAAACTTACTTG
ACATTGCAAGCCAGAGAAGTGATTTAATCCTTCTATGTGGAGGTTTAGGTCCAACAGAGGATGATTTAACAAAACAAACT
GTTGCAAGCTTTTTAGGGAAGTCTTTAGTTTTTGAGCCATCCGCCAGTCAAAAATTAGATCACTTTTTTGCGAGTCGACC
TCATTATTCCCGAACTCCAAATAATGAGCGACAAGCGCAAATTATTGAGGGGTCAACACCCATCCCAAATATTACAGGAC
TGGCTGTTGGTGGTATTTTGGAAGTTGATGGTGTAACCTACGTTCTTTTACCAGGACCACCAAGTGAATTAAAACCGATG
GTCAACCAATACCTTCTACCAGTACTATCAGGTAATCATACTGCCTTATACTCAAGAGTATTGCGTTTTTTCGGCATTGG
AGAAAGTCAGCTTGTCACAATTTTATCAGAAATGATTCATAAGCAATCAGACCCAACAATTGCACCCTATGCAAAAATTG
GTGAAGTGACATTGCGGTTGTCAACAAAAGCAGAAACACCTGAGCAGGCAAAAGCAAAGCTAGATGGTCTTGAACAGAAG
ATTTTACAAACGCCTAGCTTTGAAGGTGGATTATTAGCAGACTATCATTATGGTTATGGCGAAACCAATAGTCTCAGTGC
AGAAGTCGTAAACATGTTAAAGGAAAGAAGCATGACAATAACAGCTGCAGAGAGTCTAACCGCTGGGCTTTTTCAATCAA
CAATTGCCGACTTTCCAGGATCTTCTAAACTATTTCGTGGCGGTTTTGTGACATACCATATTGAGGAAAAGGCTAAAATG
TTACAGTTACAGCTAAGTGATTTAGAGCTCCATGGAGTTGTAAGTGCGTTTACGGCTAAAAAAATGGCGGAGCAGTCACG
TCATTTAACAGCAAGTGATATTGGAGTTGGACTAACAGGTGTGGCAGGACCAGATGCTTTAGAAGGACATAATGTGGGAA
CAGTGTTTATTGGAATTGCAACCTTAAAAGGAGCAAAATCATATAAAGTATCAATAGGTGGAAGAAGTCGTTCAGACATC
CGGTATATTGCTTGTTTACACGCTTTTGATTTGGTCCGAAAAACTTTATTAAATGGTTTGAATTTGCTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.292

98.818

0.704
  cinA Streptococcus mitis NCTC 12261

69.856

98.818

0.69
  cinA Streptococcus pneumoniae Rx1

69.617

98.818

0.688
  cinA Streptococcus pneumoniae TIGR4

69.617

98.818

0.688
  cinA Streptococcus pneumoniae R6

69.617

98.818

0.688
  cinA Streptococcus pneumoniae D39

69.378

98.818

0.686
  cinA Streptococcus mutans UA159

67.849

100

0.678
  cinA Streptococcus suis isolate S10

52.644

98.345

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

98.818

0.456

Multiple sequence alignment