Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DQM65_RS03800 | Genome accession | NZ_LS483392 |
| Coordinates | 734656..735105 (-) | Length | 149 a.a. |
| NCBI ID | WP_111691285.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC11931 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 729656..740105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM65_RS03780 (NCTC11931_00754) | rho | 730043..731305 (+) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
| DQM65_RS03785 (NCTC11931_00755) | pilD | 731359..732051 (-) | 693 | WP_111691282.1 | A24 family peptidase | Machinery gene |
| DQM65_RS03790 (NCTC11931_00756) | pilC | 732048..733268 (-) | 1221 | WP_111691283.1 | type II secretion system F family protein | Machinery gene |
| DQM65_RS03795 (NCTC11931_00757) | pilB | 733265..734659 (-) | 1395 | WP_111691284.1 | GspE/PulE family protein | Machinery gene |
| DQM65_RS03800 (NCTC11931_00758) | pilA | 734656..735105 (-) | 450 | WP_111691285.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DQM65_RS03805 (NCTC11931_00759) | ampD | 735220..735774 (+) | 555 | WP_111691286.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| DQM65_RS03810 (NCTC11931_00760) | corC | 736405..737304 (+) | 900 | WP_111691287.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| DQM65_RS03815 (NCTC11931_00761) | lnt | 737327..738856 (+) | 1530 | WP_111691987.1 | apolipoprotein N-acyltransferase | - |
| DQM65_RS03820 (NCTC11931_00762) | rsmE | 738906..739643 (+) | 738 | WP_111691288.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15653.15 Da Isoelectric Point: 9.3906
>NTDB_id=1140041 DQM65_RS03800 WP_111691285.1 734656..735105(-) (pilA) [Haemophilus influenzae strain NCTC11931]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNATAGVTWTTTCKGTDASLFPANFCRSVTK
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTSCTGGKNGIA
ADIKTAKGYVASVITQSGGITVKGNGTLANMEYILQAKGNATAGVTWTTTCKGTDASLFPANFCRSVTK
Nucleotide
Download Length: 450 bp
>NTDB_id=1140041 DQM65_RS03800 WP_111691285.1 734656..735105(-) (pilA) [Haemophilus influenzae strain NCTC11931]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGTATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTAAAGGTAATGCTACAGCAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCAGAAGTGTCACAAAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGTTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACCAAAAAAGCTGCGGTATCCGAATTACTGCAAGCGTCTGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAGCTGTACAGGGGGAAAAAATGGTATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAGCCTCAGTTATCACTCAATCAGGTGGTATTACAGTAAAAGGGAATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTAAAGGTAATGCTACAGCAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCAGAAGTGTCACAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
97.987 |
100 |
0.98 |
| pilA | Haemophilus influenzae 86-028NP |
91.275 |
100 |
0.913 |
| pilA | Glaesserella parasuis strain SC1401 |
54.73 |
99.329 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
42.958 |
95.302 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.254 |
95.302 |
0.403 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |