Detailed information NTG1139949

Bioinformatically predicted

Overview

• Name: comE
• Type: Regulator
• Locus tag: DQM93_RS10885
• Genome accession: NZ_LS483390
• Coordinates: 2034609..2035361 (-)
• Length: 250 a.a.
• NCBI ID: WP_000866065.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NCTC13276
• Function: activate transcription of early competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 2029609..2040361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM93_RS11835	-	2032042..2033645 (-)	1604	Protein_2012	YhgE/Pip family protein	-
DQM93_RS10870 (NCTC13276_02085)	-	2033824..2034366 (+)	543	WP_001158266.1	TetR/AcrR family transcriptional regulator	-
DQM93_RS10885 (NCTC13276_02088)	comE	2034609..2035361 (-)	753	WP_000866065.1	competence system response regulator transcription factor ComE	Regulator
DQM93_RS10890 (NCTC13276_02089)	comD/comD1	2035358..2036683 (-)	1326	WP_000362880.1	competence system sensor histidine kinase ComD	Regulator
DQM93_RS10895 (NCTC13276_02090)	comC/comC1	2036704..2036829 (-)	126	WP_000799689.1	competence-stimulating peptide ComC	Regulator
DQM93_RS10905 (NCTC13276_02092)	rlmH	2037111..2037590 (-)	480	WP_000695929.1	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	-
DQM93_RS10910 (NCTC13276_02093)	htrA	2037773..2038954 (+)	1182	WP_000681597.1	S1C family serine protease	Regulator
DQM93_RS10915 (NCTC13276_02094)	spo0J	2039012..2039770 (+)	759	WP_000410378.1	ParB/RepB/Spo0J family partition protein	Regulator

Sequence

Protein

• Length: 250 a.a.
• Molecular weight: 29958.31 Da
• Isoelectric Point: 6.5073

>NTDB_id=1139949 DQM93_RS10885 WP_000866065.1 2034609..2035361(-) (comE) [Streptococcus pneumoniae strain NCTC13276]
MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENDEVNQLYFLDIDIHGIEKKGFEVAQLIRHYNP
YAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSMLLENEDVVDYFDYNYKGNDLKIPYHDILY
IETTGVSHKLRIIGKNFAKEFYGTMTDIQEKDKHTQRFYSPHKSFLVNIGNIREIDRKNLEIVFYEDHRCPISRLKIRKL
KDILEKKSQK

Nucleotide

• Length: 753 bp

>NTDB_id=1139949 DQM93_RS10885 WP_000866065.1 2034609..2035361(-) (comE) [Streptococcus pneumoniae strain NCTC13276]
ATGAAAGTTTTAATTTTAGAAGATGTTATTGAACATCAAGTGAGACTAGAGAGAATATTGGATGAAATTTCGAAAGAATC
GAATATTCCAATATCATACAAGACAACGGGAAAAGTCCGTGAATTTGAAGAATACATTGAAAATGATGAAGTAAATCAGC
TTTATTTCCTAGATATCGATATTCATGGAATTGAGAAAAAGGGATTTGAAGTGGCTCAGCTCATTCGTCATTACAATCCT
TACGCTATTATCGTCTTTATCACTAGTCGATCAGAGTTTGCGACTCTAACATATAAATACCAGGTATCAGCCCTAGATTT
TGTTGATAAGGATATCAATGATGAGATGTTTAAGAAGAGAATTGAGCAAAATATCTTCTACACGAAGAGTATGTTACTTG
AAAATGAAGATGTTGTAGATTATTTCGACTACAATTACAAGGGAAATGATTTAAAAATTCCTTACCATGATATTTTGTAT
ATTGAAACAACAGGGGTATCTCATAAATTGCGCATTATTGGTAAGAATTTTGCAAAAGAGTTTTATGGTACCATGACAGA
TATTCAGGAAAAGGACAAACATACTCAGCGATTTTATTCTCCTCACAAGTCATTTTTGGTAAATATAGGCAATATCAGAG
AAATTGATCGAAAAAACTTAGAAATTGTTTTCTATGAAGACCATCGTTGTCCTATTTCAAGATTAAAAATTAGAAAATTA
AAAGATATTTTAGAGAAAAAATCTCAAAAGTGA

Domains

Predicted by InterproScan.

• LytTr DNA-binding domain (LytTR) (151-244)

• Response regulator receiver domain (Response_reg) (3-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Streptococcus pneumoniae Rx1	100	100	1
comE	Streptococcus pneumoniae D39	100	100	1
comE	Streptococcus pneumoniae R6	100	100	1
comE	Streptococcus pneumoniae TIGR4	100	100	1
comE	Streptococcus mitis SK321	99.2	100	0.992
comE	Streptococcus mitis NCTC 12261	98.4	100	0.984
comE	Streptococcus infantis strain Atu-4	91.2	100	0.912
comE/comE2	Streptococcus gordonii strain NCTC7865	62.8	100	0.628
comE/comE1	Streptococcus gordonii str. Challis substr. CH1	62.8	100	0.628
comE/blpR	Streptococcus mutans UA159	41.296	98.8	0.408