Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   DQM45_RS00700 Genome accession   NZ_LS483388
Coordinates   109321..109647 (+) Length   108 a.a.
NCBI ID   WP_003083111.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10999     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 104321..114647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS00685 (NCTC10999_00141) - 106967..107332 (+) 366 WP_003085731.1 DUF1033 family protein -
  DQM45_RS00690 (NCTC10999_00142) comYA 107413..108354 (+) 942 WP_003084519.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM45_RS00695 (NCTC10999_00143) comYB 108266..109321 (+) 1056 WP_370737019.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM45_RS00700 (NCTC10999_00144) comYC 109321..109647 (+) 327 WP_003083111.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM45_RS00705 (NCTC10999_00145) comGD 109697..110035 (+) 339 WP_003085212.1 competence type IV pilus minor pilin ComGD -
  DQM45_RS00710 (NCTC10999_00146) comGE 110007..110300 (+) 294 WP_039984736.1 competence type IV pilus minor pilin ComGE -
  DQM45_RS00715 (NCTC10999_00147) comGF 110260..110721 (+) 462 WP_003082840.1 competence type IV pilus minor pilin ComGF -
  DQM45_RS00720 (NCTC10999_00148) comGG 110699..111097 (+) 399 WP_039984739.1 competence type IV pilus minor pilin ComGG -
  DQM45_RS00725 (NCTC10999_00149) comYH 111142..112098 (+) 957 WP_003084266.1 class I SAM-dependent methyltransferase Machinery gene
  DQM45_RS00730 (NCTC10999_00150) - 112154..113347 (+) 1194 WP_003085774.1 acetate kinase -
  DQM45_RS00735 (NCTC10999_00152) - 113612..113821 (+) 210 WP_003083613.1 helix-turn-helix transcriptional regulator -
  DQM45_RS00740 (NCTC10999_00153) - 113818..114270 (+) 453 WP_039984742.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12293.37 Da        Isoelectric Point: 9.3041

>NTDB_id=1139778 DQM45_RS00700 WP_003083111.1 109321..109647(+) (comYC) [Streptococcus porcinus strain NCTC10999]
MQKLGNKIKDVSLEGFTLLEMLLVLLIISVLMLLFIPNLNKQKDMVTDKGKAAVVKIVDNQAELYELNQGASPKLSELEN
KGDISKEQAKAYRDYYVKHDNKNRKVQD

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1139778 DQM45_RS00700 WP_003083111.1 109321..109647(+) (comYC) [Streptococcus porcinus strain NCTC10999]
ATGCAGAAATTAGGAAACAAAATAAAAGATGTCAGTCTAGAAGGATTCACTTTACTAGAAATGTTACTGGTCTTATTAAT
CATTAGTGTACTCATGCTCCTCTTTATTCCCAACCTAAACAAACAAAAAGATATGGTTACGGATAAAGGTAAGGCTGCAG
TTGTAAAAATTGTTGATAACCAAGCAGAACTCTATGAGCTAAATCAAGGTGCTAGTCCCAAATTGAGTGAATTGGAAAAT
AAAGGGGACATTAGTAAAGAGCAAGCAAAAGCCTATCGAGACTATTATGTTAAACATGACAACAAAAATCGTAAAGTGCA
AGATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

63

92.593

0.583
  comYC Streptococcus mutans UA159

63

92.593

0.583
  comGC/cglC Streptococcus mitis SK321

57.407

100

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae Rx1

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae D39

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae R6

55.556

100

0.556
  comGC/cglC Streptococcus mitis NCTC 12261

54.63

100

0.546
  comYC Streptococcus gordonii str. Challis substr. CH1

55.769

96.296

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

49.524

97.222

0.481
  comYC Streptococcus suis isolate S10

52.326

79.63

0.417

Multiple sequence alignment