Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM63_RS02115 Genome accession   NZ_LS483385
Coordinates   403258..405243 (+) Length   661 a.a.
NCBI ID   WP_002908884.1    Uniprot ID   F0IKD4
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 398258..410243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02100 (NCTC7863_00410) amiA 398924..400879 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02105 (NCTC7863_00411) amiA3 401055..403025 (+) 1971 WP_002913958.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02115 (NCTC7863_00412) amiA 403258..405243 (+) 1986 WP_002908884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02120 (NCTC7863_00413) amiC 405308..406804 (+) 1497 WP_002913957.1 ABC transporter permease Regulator
  DQM63_RS02125 (NCTC7863_00414) amiD 406804..407730 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM63_RS02130 (NCTC7863_00415) amiE 407739..408806 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02135 (NCTC7863_00416) amiF 408817..409743 (+) 927 WP_002901220.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73418.41 Da        Isoelectric Point: 4.6561

>NTDB_id=1139612 DQM63_RS02115 WP_002908884.1 403258..405243(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
MKQSKVLALAGVTLLAAGFLAACSGSKPNTKSGSSDSSNTFNYIYETDPENLNYLTSSKAATTDLTANVIDGLLENDQYG
NLVPSMAEEWTVSPDGKTYTYKLRKDAKWYTSEGEEYADVTAEDFVTGLKYAADNKSETIYLVQDSVKGLKDYISGKIDF
SEVGIKAVDDHTVEYTLNEPESFWNSKTTMGILYPVNKDFLKNQGDKFAQATDPTSLLYNGPFLLKSLTSKSEIQFEKNP
NYWDKENVHVDAVKLSFYDGQDQGKLADQFSQGALTTARLFPTSATYEKVEKDFKDNIVYTPQDASTFLVGTNIDRQSYN
HTAKTSEAQKNSTKKALLNKDFRQALTFAFNRESYASQINGKDGADKLLRNLYIPPTFVQAGDKSFGDLVKEKVVTYGDE
WKDVDFSDGQDGLYNENKAKAEFAKAKEALKADGVEFPIHLDIPVDQTATSKVQRVQSLKQSIEKTLGTDNVVIDVHQLS
KDEVTNITLFAPSAAEEDWDISDNVGWSPDYQDPSTYLDVIKPGGENTKTFLGFDGTDNAAAKQVGLDEYTKLVDEAGAE
KQDLNKRYEKYAAAQAWLTDSALLIPVTSRTGRPTLTKVVPFSAPFAWSGAKAREAASYKYMKLQDEPVTTKDYNSAQEK
WNKERAESNKKAQEELADHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1139612 DQM63_RS02115 WP_002908884.1 403258..405243(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
ATGAAACAAAGCAAAGTCCTTGCGCTAGCAGGAGTCACTCTTCTTGCAGCTGGCTTTCTTGCTGCTTGCTCTGGCTCTAA
GCCAAACACAAAGTCAGGCAGCTCAGACTCTTCAAACACCTTTAATTATATCTACGAGACAGATCCTGAAAACTTGAACT
ATCTCACTTCAAGTAAAGCTGCTACAACAGACTTGACTGCCAATGTCATTGACGGTCTTTTAGAAAACGACCAATATGGA
AACTTAGTTCCTTCAATGGCAGAGGAATGGACTGTATCCCCAGATGGGAAAACCTATACTTATAAGCTTCGCAAAGACGC
TAAGTGGTATACTTCCGAAGGTGAAGAGTACGCAGATGTGACAGCAGAAGACTTTGTTACAGGTCTTAAGTATGCGGCAG
ACAATAAATCTGAAACAATCTACTTGGTTCAGGATTCTGTCAAAGGGCTTAAGGACTATATTTCTGGGAAGATTGATTTC
TCAGAAGTAGGGATTAAAGCAGTCGATGATCATACCGTTGAGTATACTCTTAATGAGCCAGAAAGCTTCTGGAACTCTAA
GACTACAATGGGAATTCTCTACCCAGTAAACAAAGACTTTTTGAAAAACCAAGGCGATAAGTTCGCTCAAGCAACGGATC
CAACAAGTTTGCTTTACAACGGACCTTTCTTGCTTAAATCATTGACTTCAAAATCTGAAATCCAGTTTGAAAAGAATCCT
AATTATTGGGACAAAGAAAATGTTCACGTAGATGCAGTTAAACTCTCTTTCTATGATGGACAAGATCAAGGGAAACTAGC
TGATCAGTTCAGTCAAGGAGCTCTGACAACAGCCAGACTCTTCCCAACTAGTGCGACTTATGAAAAGGTTGAAAAAGACT
TTAAAGATAATATCGTCTATACACCTCAGGATGCCTCAACTTTCTTAGTAGGTACTAACATTGATCGCCAGTCTTACAAC
CATACTGCTAAGACATCAGAAGCTCAAAAGAATTCAACTAAGAAAGCCTTACTTAACAAGGACTTTCGTCAGGCTTTGAC
CTTTGCCTTCAATCGTGAGTCTTATGCATCTCAGATTAATGGTAAGGACGGAGCGGACAAACTTCTTCGTAACCTTTACA
TCCCACCTACATTTGTGCAAGCTGGTGACAAATCCTTCGGTGACTTAGTTAAGGAAAAAGTAGTAACTTATGGCGACGAG
TGGAAAGATGTGGACTTCTCAGATGGCCAAGATGGTCTCTATAACGAGAACAAAGCAAAGGCTGAATTTGCTAAAGCAAA
AGAAGCTTTGAAAGCCGATGGAGTAGAATTCCCAATCCATCTGGACATTCCGGTTGATCAAACAGCTACTTCTAAAGTAC
AGCGTGTTCAATCCCTCAAGCAGTCTATCGAAAAGACTTTGGGAACAGATAATGTTGTGATTGATGTTCACCAGTTGTCT
AAGGATGAAGTGACTAACATTACCTTATTTGCACCTTCTGCTGCTGAAGAGGACTGGGATATTTCAGATAATGTCGGCTG
GTCTCCAGACTATCAAGATCCATCTACCTATCTTGATGTTATCAAACCTGGTGGTGAAAACACCAAGACCTTCTTAGGAT
TTGATGGCACAGATAATGCAGCAGCGAAACAAGTTGGTTTGGATGAATATACCAAGCTGGTTGACGAAGCGGGTGCAGAA
AAGCAAGATTTGAACAAGCGTTATGAAAAATATGCGGCTGCTCAGGCTTGGCTGACTGATAGTGCTTTGTTGATTCCGGT
AACTTCTAGAACAGGCCGTCCAACCTTGACTAAGGTAGTGCCTTTCTCAGCACCGTTTGCTTGGTCTGGTGCTAAGGCGC
GTGAAGCAGCAAGTTATAAGTACATGAAATTGCAGGATGAGCCTGTAACGACAAAAGATTATAATAGCGCTCAGGAAAAA
TGGAATAAAGAACGTGCGGAATCTAATAAAAAAGCTCAAGAAGAATTAGCAGACCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0IKD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.241

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

60.09

100

0.604
  amiA3 Streptococcus thermophilus LMG 18311

59.789

100

0.601

Multiple sequence alignment