Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQM63_RS02130 Genome accession   NZ_LS483385
Coordinates   407739..408806 (+) Length   355 a.a.
NCBI ID   WP_002902455.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 402739..413806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02115 (NCTC7863_00412) amiA 403258..405243 (+) 1986 WP_002908884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02120 (NCTC7863_00413) amiC 405308..406804 (+) 1497 WP_002913957.1 ABC transporter permease Regulator
  DQM63_RS02125 (NCTC7863_00414) amiD 406804..407730 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM63_RS02130 (NCTC7863_00415) amiE 407739..408806 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02135 (NCTC7863_00416) amiF 408817..409743 (+) 927 WP_002901220.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39487.18 Da        Isoelectric Point: 4.7521

>NTDB_id=1139615 DQM63_RS02130 WP_002902455.1 407739..408806(+) (amiE) [Streptococcus sanguinis strain NCTC7863]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFKVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1139615 DQM63_RS02130 WP_002902455.1 407739..408806(+) (amiE) [Streptococcus sanguinis strain NCTC7863]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGATGTCCGCGACCGAGTTTTAACAGC
CATTCGCGGAGTCTCTCTGGACTTGATTGAAGGTGAAGTACTGGCTATTGTTGGTGAATCAGGCTCAGGAAAGTCTGTAT
TGACTAAGACTTTTACTGGCATGTTAGAAGAAAACGGCCGTGTAGCTCAAGGAACTATTGACTACCGTGGCAAAGATTTG
ACAACTCTTCGTAGTAATAAGGATTGGGAGCCGATTCGCGGTGCAAAAATTGCGACTATCTTCCAAGATCCGATGACGAG
CTTGGATCCCATTAATACGATTGGAAGCCAAATTACAGAAGTCATAATCAAGCACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATCGATTATATGAGCAAGGTCGGAATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCAGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCCTTAGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCAAC
AACGGCCCTCGATGTAACGATTCAAGCGCAGATTATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGTACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTATCCAGCTTACCTCAGTTGGC
AGATGCGAATGGTGCCCTCTACTCGATTCCTGGTACTCCGCCGTCTCTCTATTCACCGATCAAAGGGGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCAATTGACTTTGAAGAAGAAGCACCGGCTTTCAAGGTCTCAGATACTCATTGGGCTAAG
ACTTGGTTGCTGCACGAAGATGCGCCTAAAGTTGATAAACCAGAGATTATCGAAAACCTACATGAAAAAATTCGTTCGAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.31

96.338

0.552

Multiple sequence alignment