Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM63_RS02125 Genome accession   NZ_LS483385
Coordinates   406804..407730 (+) Length   308 a.a.
NCBI ID   WP_002898857.1    Uniprot ID   A0A2X4CY31
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 401804..412730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02115 (NCTC7863_00412) amiA 403258..405243 (+) 1986 WP_002908884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02120 (NCTC7863_00413) amiC 405308..406804 (+) 1497 WP_002913957.1 ABC transporter permease Regulator
  DQM63_RS02125 (NCTC7863_00414) amiD 406804..407730 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator
  DQM63_RS02130 (NCTC7863_00415) amiE 407739..408806 (+) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  DQM63_RS02135 (NCTC7863_00416) amiF 408817..409743 (+) 927 WP_002901220.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34624.69 Da        Isoelectric Point: 9.8486

>NTDB_id=1139614 DQM63_RS02125 WP_002898857.1 406804..407730(+) (amiD) [Streptococcus sanguinis strain NCTC7863]
MATIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTITMLGILIAIILMSFIYPMFSNFDFNDVSKVNDFSMR
YIKPSAQYWFGTDSNGKSLFDGVWFGARNSILISIIATVINLAIGVIIGGIWGISKTVDRVMMEIYNIISNIPALLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLTFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139614 DQM63_RS02125 WP_002898857.1 406804..407730(+) (amiD) [Streptococcus sanguinis strain NCTC7863]
ATGGCTACAATTGATAAAAGCAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTCATGCGTCAATTTCTGAAAAAGAAATCAACCATTACCATGCTGGGGATTCTGATTGCCATTA
TTCTCATGAGCTTCATTTATCCTATGTTTTCAAACTTCGACTTTAATGACGTGAGCAAGGTAAATGACTTTAGCATGCGT
TATATCAAGCCAAGTGCTCAATACTGGTTTGGAACGGACAGTAATGGTAAGTCTCTCTTTGACGGTGTTTGGTTTGGTGC
CCGTAACTCTATTCTTATTTCGATTATTGCGACGGTTATTAATCTGGCTATCGGAGTTATCATTGGCGGTATCTGGGGAA
TTTCCAAAACAGTTGACCGTGTCATGATGGAAATCTACAATATCATTTCAAATATCCCAGCCCTCTTGATTGTCATCGTC
TTGACCTACTCTATCGGTGCTGGTTTCTGGAATCTTATTTTTGCCATGACGATTACTGGTTGGGTCGGTATTGCCTACAC
TATCCGTGTGCAGATTATGCGCTATCGGGATTTGGAGTACAACCTTGCCTCTCGTACTCTTGGTACACCAACTCTCAAGA
TTGTAACGAAGAACATTATGCCGCAGTTGGTATCTGTTATCGTGACTACCACTTCACAGATGCTGCCAAGCTTTATCTCT
TACGAAGCCTTTCTGTCCTTCTTTGGCTTAGGGCTTCCTGTAACAGTGCCAAGTTTGGGACGCTTGATTTCAGATTATTC
ACAAAACGTGACGACCAATGCCTACCTCTTTTGGATTCCACTAACAACTCTGATTTTGGTATCCCTTACTTTCTTCGTAG
TTGGTCAAAACTTAGCCGACGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4CY31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.364

100

0.864
  amiD Streptococcus thermophilus LMG 18311

84.416

100

0.844
  amiD Streptococcus thermophilus LMD-9

84.416

100

0.844

Multiple sequence alignment