Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM63_RS02105 Genome accession   NZ_LS483385
Coordinates   401055..403025 (+) Length   656 a.a.
NCBI ID   WP_002913958.1    Uniprot ID   F2CGV4
Organism   Streptococcus sanguinis strain NCTC7863     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 396055..408025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02095 (NCTC7863_00409) pbp3 397363..398631 (-) 1269 WP_002913960.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM63_RS02100 (NCTC7863_00410) amiA 398924..400879 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02105 (NCTC7863_00411) amiA3 401055..403025 (+) 1971 WP_002913958.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02115 (NCTC7863_00412) amiA 403258..405243 (+) 1986 WP_002908884.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02120 (NCTC7863_00413) amiC 405308..406804 (+) 1497 WP_002913957.1 ABC transporter permease Regulator
  DQM63_RS02125 (NCTC7863_00414) amiD 406804..407730 (+) 927 WP_002898857.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72622.23 Da        Isoelectric Point: 4.5861

>NTDB_id=1139611 DQM63_RS02105 WP_002913958.1 401055..403025(+) (amiA3) [Streptococcus sanguinis strain NCTC7863]
MKTSKLAAAAGLVILSAGVLAACSFGGSNSSGKNYSYVYTADPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSVKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFFVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGFYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKSVQSLKQSIEANLGSDNVVIDIQQMTDDELN
NITYFATSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDSYFGFDPGTDNAAAKEAGFEEYDKLLEDAASENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQKELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1139611 DQM63_RS02105 WP_002913958.1 401055..403025(+) (amiA3) [Streptococcus sanguinis strain NCTC7863]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGTGTTTTGGCTGCATGTTCGTTTGGTGG
CTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACGGCAGATCCAGATACGCTGGATTACACTGTGTCCAATAAGC
GGGCAACCAATGAGATTATGGCTAATGTAGTGGATGGTTTGCTAGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACCGTTTCAAAGGATGGTCTGACCTATACTTATAAGCTTCGTAAGGGAGTGAAGTGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCTGCTGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCTGTTAAAGGCTTGGACGACTATGTCAATGGTAAAATAACTGACTTCTCCCAAGTTGGTGTC
AAGGCGGTGGATGATTCTACTGTTCAATACACTTTGAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGAAT
TCTTTTCCCAATTAACGAAGAATTTCTGAAATCAAAAGGTGACAAGTTTGCTCAGGGAACGGATCCGACCAGTGTCCTCT
ACAACGGTCCGTTTATCTTGAAATCTATAACTTCGAAATCTCAAATTAGCTTAGAGAAGAACCCAAACTATTGGGATAAG
GAAAAGGTAAAAATTGATACAGTCAAATTCTCTTACTATGATGGTCAAGATACAGAATCTCTGGTGCGTGGCTTTTCTGA
TGGCAACTACACCATTGCTCGTCTTTTCCCAAATAGCTCCAACTTTGCCAGTGTGAAGAAACAGTATGGCGATAATATCG
TCTACACTCCTCAAGGTTCAGGAACCTTCTTTGTTACAACTAATATTGATCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAGAAGTCTTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGTCAGGCTCTGCTTTTTGCCTTTGACCG
GACTGCCTATTCTGCACAAACCAATGGCGAAGAAGCAGCAGACAAGCAGCTTCGTAATACCTTTGTTCCGCCAACCTTTG
TTCAAGCTAATGGGAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTAGCTAGTTACGGTGATGAGTGGAAGGGAGTCAAA
TTAGACGACGCTCAGGATGGCTTTTATAATCCAGAAAAAGCTAAGGCAGAATTTGCCAAAGCTAAGGAAGCGCTGCAGGC
AGAAGGAGTGGAATTCCCTATTCATCTGGATATTCCGGTCAGCTCAGCAGATACCAATGGCGTTAAGAGTGTTCAGTCAC
TGAAGCAGTCTATTGAAGCTAATCTTGGCTCTGACAATGTAGTGATTGATATTCAGCAAATGACAGATGATGAGTTGAAT
AATATCACCTACTTTGCTACCTCTGCATCCCAAGAAGACTGGGATTTGAATAATAATCTTGGCTGGAGTCCAGATTATAA
CGATCCATCTTCTTATCTGGAAATCACTGGCTCTAAGACTGGTGAGAATGTTGACAGCTACTTTGGTTTTGACCCTGGAA
CAGATAATGCAGCAGCTAAAGAGGCTGGCTTTGAAGAGTATGATAAACTCTTGGAAGACGCTGCTTCAGAAAACGAGGAT
ATTAACAAACGTTACGAAAAATATGCTGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTGATGCCGGCATGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCATTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGATAAACCAATAACGACTAAAGAATATGAAAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAATCCAATAAAAAAGCTCAAAAAGAACTCGCAGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2CGV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.939

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.181

100

0.595
  amiA Streptococcus salivarius strain HSISS4

58.815

100

0.59

Multiple sequence alignment