Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DQM63_RS02100 Genome accession   NZ_LS483385
Coordinates   398924..400879 (+) Length   651 a.a.
NCBI ID   WP_032908236.1    Uniprot ID   A0A2X3XDU1
Organism   Streptococcus sanguinis strain NCTC7863     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 393924..405879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM63_RS02080 (NCTC7863_00406) - 394137..395369 (+) 1233 WP_002902440.1 cysteine desulfurase -
  DQM63_RS02085 (NCTC7863_00407) sufU 395356..395793 (+) 438 WP_002902442.1 Fe-S cluster assembly sulfur transfer protein SufU -
  DQM63_RS02090 (NCTC7863_00408) sufB 395811..397223 (+) 1413 WP_002893631.1 Fe-S cluster assembly protein SufB -
  DQM63_RS02095 (NCTC7863_00409) pbp3 397363..398631 (-) 1269 WP_002913960.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM63_RS02100 (NCTC7863_00410) amiA 398924..400879 (+) 1956 WP_032908236.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02105 (NCTC7863_00411) amiA3 401055..403025 (+) 1971 WP_002913958.1 peptide ABC transporter substrate-binding protein Regulator
  DQM63_RS02115 (NCTC7863_00412) amiA 403258..405243 (+) 1986 WP_002908884.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72393.13 Da        Isoelectric Point: 4.5618

>NTDB_id=1139610 DQM63_RS02100 WP_032908236.1 398924..400879(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
MKKSKWLAIAGLTVVSTLILAACGNSNASNTYSYVYSNDPDTLDYVNSNRATTSDVIANLVDGLLENDEYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYSEVKAQDFVTGLKHAADEKSEALPIVQSSIKGLDAYVKGESNDFSTVGVKAV
DDYTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
IENVKLTYYDGSDQEALIRNFSDGAYSQARLYPTSSNYASVEKQYKDNIIFSPQNSTSFYFAFNLNRKTYNHSSKTSDAQ
KASTTAAIQNKDFRQAINFAFDRTSFGAQMNGKDGATKLIRSLLVPPSFVQVDGKDFSDVVESKLPTYGDEWSGVKLTDA
QDSIYNADKAKAEFAKAKEALQAEGVEFPIHIDIPVDQTDKVLVQRTNSFKQSVEAALGQDNVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDATDNIGLEKGKNADVANKVGLNEYKELLDEADKEKQDTNARYT
KYAAAQAWLTDSSIVIPGVSGGGSPVVQKVVPFTKSYSYVGIKGDVYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEELEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=1139610 DQM63_RS02100 WP_032908236.1 398924..400879(+) (amiA) [Streptococcus sanguinis strain NCTC7863]
ATGAAAAAATCAAAATGGTTGGCCATTGCTGGACTAACAGTCGTGTCAACACTAATCTTAGCTGCTTGTGGAAATTCCAA
CGCAAGCAATACCTATTCTTATGTCTATTCGAATGACCCTGATACTTTGGACTATGTCAATTCAAATCGAGCTACTACTT
CTGATGTTATTGCAAACTTGGTGGATGGCCTTTTAGAAAATGATGAATATGGCAATCTGGTTCCATCTATTGCGGAAGAC
TGGACTGTTTCAAAGGACGGTCTGACCTATACCTATAAGCTTCGCAAAGATGCTAAATGGTATACATCAGACGGTGAAGA
ATACTCAGAGGTTAAAGCTCAAGACTTTGTAACTGGTTTGAAGCATGCAGCAGATGAAAAATCAGAAGCTCTTCCAATTG
TCCAAAGCTCTATCAAAGGCTTGGATGCCTATGTCAAGGGTGAGTCAAATGACTTTTCAACCGTCGGTGTCAAGGCTGTC
GATGACTATACGGTTGAGTATACTCTTAACCAGCCAGAAAGTTATTGGAACTCTAAAACTACTATGGGGATTCTGTTCCC
AATCAATGAGGATTTCTTAAAGTCACAAGGCAAAGATTTTGGTACTGTAAAACCTTCCTCTATTCTTTATAATGGCCCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAGAACTACTGGGATAAGGACAATGTCAAG
ATTGAAAATGTGAAGCTGACTTACTATGATGGTTCTGACCAAGAAGCTTTGATTCGTAACTTCTCAGATGGAGCCTACTC
TCAAGCGCGACTTTATCCGACAAGTTCTAACTACGCTTCTGTAGAAAAACAATACAAAGATAATATTATCTTCTCACCGC
AGAATTCAACTAGTTTCTATTTTGCTTTCAATCTGAATCGTAAGACTTATAATCATTCGTCTAAGACATCAGATGCTCAA
AAGGCATCAACTACAGCTGCTATTCAAAATAAAGACTTCCGTCAGGCAATCAACTTTGCCTTTGACCGGACATCTTTTGG
AGCTCAGATGAATGGTAAAGATGGGGCGACTAAACTCATCCGTAGCTTACTTGTTCCTCCTAGCTTCGTGCAGGTTGATG
GCAAAGACTTTTCAGATGTAGTAGAGAGCAAACTTCCTACATACGGTGATGAGTGGAGCGGTGTCAAACTGACAGATGCC
CAAGACAGCATCTACAATGCTGACAAGGCCAAGGCTGAGTTTGCTAAGGCTAAGGAAGCCTTGCAAGCAGAAGGTGTTGA
ATTCCCGATTCATATCGATATCCCTGTGGATCAGACTGACAAAGTCTTAGTGCAGCGGACTAACTCTTTCAAACAGTCTG
TTGAAGCAGCACTCGGTCAGGACAATGTCGTCATTGATGTTCAGCAAATGTCTACAGATGACTTTGATAACTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAGGACTACGACCTCAACATGTCTGGTTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATTTTCAACCCAGAAACGGGTGACGCTACAGATAATATTGGTTTAGAAAAAGGGAAAAATGCTGATGTTGCAA
ATAAAGTTGGCTTGAACGAATACAAAGAGTTATTGGATGAGGCTGATAAGGAAAAACAAGATACCAATGCTCGTTATACT
AAATACGCAGCAGCTCAGGCTTGGCTGACAGATAGCTCCATTGTTATTCCCGGTGTTTCTGGCGGTGGTTCACCAGTTGT
TCAAAAGGTCGTGCCATTTACCAAGTCTTACTCTTATGTCGGAATCAAAGGAGATGTCTATGTCTTTAAGAACATGGAAC
TCCAAAATGATATTGTGACGGCCAAAGACTACGAAGCTGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGAGCTAGAAAAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XDU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.23

100

0.578
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.568
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.565

Multiple sequence alignment