Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM67_RS09660 Genome accession   NZ_LS483383
Coordinates   1889817..1891073 (-) Length   418 a.a.
NCBI ID   WP_005592095.1    Uniprot ID   A0AAV3EG65
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884817..1896073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS09625 (NCTC12479_01865) - 1885664..1885975 (-) 312 WP_005591498.1 DUF1292 domain-containing protein -
  DQM67_RS09630 (NCTC12479_01866) ruvX 1885996..1886415 (-) 420 WP_005591497.1 Holliday junction resolvase RuvX -
  DQM67_RS09635 (NCTC12479_01867) - 1886415..1886681 (-) 267 WP_005592119.1 IreB family regulatory phosphoprotein -
  DQM67_RS09640 (NCTC12479_01868) - 1886850..1887407 (-) 558 WP_005591495.1 SP0191 family lipoprotein -
  DQM67_RS09645 (NCTC12479_01869) - 1887451..1888017 (-) 567 WP_005591494.1 SP0191 family lipoprotein -
  DQM67_RS09650 (NCTC12479_01870) spx 1888126..1888524 (-) 399 WP_005591493.1 transcriptional regulator Spx -
  DQM67_RS09655 (NCTC12479_01871) recA 1888610..1889758 (-) 1149 WP_005591492.1 recombinase RecA Machinery gene
  DQM67_RS09660 (NCTC12479_01872) cinA 1889817..1891073 (-) 1257 WP_005592095.1 competence/damage-inducible protein A Machinery gene
  DQM67_RS09665 (NCTC12479_01873) - 1891344..1891754 (+) 411 WP_005591489.1 helix-turn-helix domain-containing protein -
  DQM67_RS09670 (NCTC12479_01874) - 1891798..1892355 (-) 558 WP_005591488.1 GNAT family N-acetyltransferase -
  DQM67_RS09675 (NCTC12479_01875) - 1892427..1893086 (-) 660 WP_005592074.1 CPBP family intramembrane glutamic endopeptidase -
  DQM67_RS09680 (NCTC12479_01876) - 1893091..1893645 (-) 555 WP_005591486.1 DNA-3-methyladenine glycosylase I -
  DQM67_RS09685 (NCTC12479_01877) ruvA 1893655..1894245 (-) 591 WP_005592118.1 Holliday junction branch migration protein RuvA -
  DQM67_RS09690 (NCTC12479_01878) - 1894415..1894921 (+) 507 WP_037586090.1 helix-turn-helix domain-containing protein -
  DQM67_RS10590 - 1894905..1895426 (+) 522 Protein_1786 RDD family protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44897.10 Da        Isoelectric Point: 4.5377

>NTDB_id=1139540 DQM67_RS09660 WP_005592095.1 1889817..1891073(-) (cinA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGVDVYFQTAVGDNENRLLSVLEIAKERSDLIILTGGLGPTEDDLTKQT
LAKFVGRDLSFDPAAVEKLDRFFASRPDYARTPNNERQAQLVTGSTPLPNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLSTGQKLYSRVLRFFGIGESQLVTILAEMIDQQSDPTIAPYAKTGEVTLRLSTKALSQAEADAKFEVVEKEI
LAHKTFEGQPLSEILYGYGDDNSLAQVAFDLLKSQTKTISAAESLTAGLFQATLADFAGASAIFSGGFVTYSMEEKSRML
DIPLGELEQHGVVSAFTAGKMAEQARKLTESDLAVSLTGVAGPDSLEDHPAGTVFIALASESETEIIEVNIAGRSRRDVR
KIAVMHAFNLIRKTLLKN

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1139540 DQM67_RS09660 WP_005592095.1 1889817..1891073(-) (cinA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAAGCAGAAATTATTGCTGTGGGCACCGAGATTCTGACAGGTCAGATTGTCAATACCAATGCCCAATTTTTATCTGA
AAAGCTAGCTAGTCTAGGAGTTGATGTCTATTTTCAGACGGCAGTGGGGGACAATGAAAATCGCCTTCTCTCTGTCCTAG
AAATTGCCAAAGAGCGCAGTGATTTAATTATCCTGACAGGAGGTTTGGGGCCAACAGAGGATGATTTGACCAAGCAGACC
TTGGCTAAGTTTGTCGGTCGAGATTTGAGCTTCGACCCAGCGGCTGTGGAAAAGTTGGATCGTTTTTTTGCCAGCCGACC
AGACTATGCCCGAACGCCCAACAATGAACGTCAGGCCCAGCTGGTGACAGGCTCGACTCCGCTACCAAATGCGACTGGCT
TAGCTGTCGGAGGATTGTTAGAAGCAGACGGAGTGACCTATGTAGTCCTGCCTGGCCCACCTAGCGAGCTCAAACCTATG
GTCAATAACGAGCTGGTTCCCCTCTTATCCACAGGTCAAAAACTGTATTCACGGGTGCTGCGCTTCTTCGGAATTGGCGA
GAGTCAGCTGGTGACTATTTTGGCTGAAATGATTGATCAACAAAGCGATCCGACCATTGCACCTTATGCAAAGACGGGCG
AAGTGACCTTGCGACTGTCCACCAAGGCCTTGAGCCAGGCAGAAGCGGATGCTAAGTTTGAGGTTGTGGAAAAGGAAATT
TTGGCGCATAAGACTTTTGAGGGGCAGCCTTTGTCTGAGATTCTCTACGGTTATGGGGATGACAATTCTTTGGCTCAAGT
TGCCTTTGATTTGCTCAAGAGTCAAACGAAGACGATTTCGGCGGCGGAGAGTTTGACAGCAGGCCTCTTTCAAGCGACCT
TGGCTGATTTTGCTGGAGCTTCAGCTATTTTTTCAGGTGGCTTTGTCACCTACAGCATGGAGGAAAAGAGCCGGATGCTG
GATATTCCGTTGGGAGAACTGGAGCAGCACGGTGTCGTTTCTGCTTTTACTGCTGGGAAAATGGCAGAGCAGGCTAGAAA
GCTGACCGAAAGTGACCTAGCTGTCAGTCTGACAGGTGTGGCTGGTCCAGATTCGCTGGAAGACCATCCAGCAGGGACCG
TTTTTATCGCCTTAGCGAGTGAATCAGAAACGGAAATTATTGAGGTCAATATTGCTGGTCGCAGCCGACGGGATGTGCGG
AAGATTGCCGTTATGCATGCCTTCAACCTCATACGAAAAACTTTATTAAAGAACTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Competence-damaged protein (CinA)

(262-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

76.077

100

0.761
  cinA Streptococcus mitis NCTC 12261

75.598

100

0.756
  cinA Streptococcus pneumoniae TIGR4

75.598

100

0.756
  cinA Streptococcus pneumoniae Rx1

75.598

100

0.756
  cinA Streptococcus pneumoniae R6

75.598

100

0.756
  cinA Streptococcus pneumoniae D39

75.359

100

0.754
  cinA Streptococcus mutans UA159

73.27

100

0.734
  cinA Streptococcus suis isolate S10

54.087

99.522

0.538
  cinA Bacillus subtilis subsp. subtilis str. 168

46.89

100

0.469

Multiple sequence alignment