Detailed information NTG1139535

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQM67_RS09460
• Genome accession: NZ_LS483383
• Coordinates: 1852180..1852614 (-)
• Length: 144 a.a.
• NCBI ID: WP_037586086.1
• Uniprot ID: -
• Organism: Streptococcus cristatus ATCC 51100 strain NCTC 12479
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1847180..1857614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM67_RS09430 (NCTC12479_01826)	-	1847632..1848522 (+)	891	WP_005591542.1	RluA family pseudouridine synthase	-
DQM67_RS09435 (NCTC12479_01827)	-	1848846..1850039 (-)	1194	WP_005591541.1	acetate kinase	-
DQM67_RS09440 (NCTC12479_01828)	comYH	1850075..1851040 (-)	966	WP_005591540.1	class I SAM-dependent methyltransferase	Machinery gene
DQM67_RS09445 (NCTC12479_01829)	comGG	1851121..1851519 (-)	399	WP_005591539.1	competence type IV pilus minor pilin ComGG	-
DQM67_RS09450 (NCTC12479_01830)	comGF/cglF	1851500..1851937 (-)	438	WP_005591538.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM67_RS09455 (NCTC12479_01831)	comGE	1851921..1852214 (-)	294	WP_174263560.1	competence type IV pilus minor pilin ComGE	-
DQM67_RS09460 (NCTC12479_01832)	comYD	1852180..1852614 (-)	435	WP_037586086.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM67_RS09465 (NCTC12479_01833)	comYC	1852574..1852891 (-)	318	WP_005591535.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM67_RS09470 (NCTC12479_01834)	comYB	1852888..1853904 (-)	1017	WP_255209852.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM67_RS09475 (NCTC12479_01835)	comYA	1853852..1854793 (-)	942	WP_005591533.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM67_RS09480 (NCTC12479_01836)	-	1854879..1855250 (-)	372	WP_005591532.1	DUF1033 family protein	-
DQM67_RS09485 (NCTC12479_01837)	-	1855384..1856652 (-)	1269	WP_005591531.1	CapA family protein	-
DQM67_RS09495 (NCTC12479_01838)	comW	1856896..1857123 (-)	228	WP_005592089.1	sigma(X)-activator ComW	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16294.74 Da
• Isoelectric Point: 8.4324

>NTDB_id=1139535 DQM67_RS09460 WP_037586086.1 1852180..1852614(-) (comYD) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MEKTAVKLVQLRIKAFTLLESLLALFVVSFILLGLSGSVQAGFNQVQEQLFFMEFEHLYQESQKLSVAGHEKIKLTISER
NISNGYQQVEFPKTLQEHAPQTIQFDQAGGNSSLSKIVFQTEDKKVVYQLYMGNGKFKKTTNEG

Nucleotide

• Length: 435 bp

>NTDB_id=1139535 DQM67_RS09460 WP_037586086.1 1852180..1852614(-) (comYD) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGGAAAAAACAGCAGTGAAGCTCGTACAGTTGCGGATTAAGGCTTTTACGCTGTTAGAAAGTCTCCTGGCTTTATTTGT
GGTCAGTTTCATTTTATTAGGTCTATCTGGCTCTGTTCAGGCTGGTTTCAATCAAGTACAGGAGCAGCTGTTTTTCATGG
AATTTGAGCATCTTTATCAGGAGAGCCAAAAGCTAAGTGTGGCTGGACATGAAAAGATAAAATTGACCATTTCGGAGCGC
AACATCTCCAACGGCTATCAGCAAGTAGAATTTCCCAAGACTTTGCAGGAACATGCTCCCCAGACCATTCAGTTTGACCA
GGCTGGCGGGAATTCTTCGCTCAGTAAGATTGTTTTTCAAACGGAGGATAAAAAGGTTGTTTACCAGCTTTATATGGGCA
ATGGAAAGTTTAAAAAGACGACGAATGAAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	61.972	98.611	0.611
comGD/cglD	Streptococcus mitis NCTC 12261	55.396	96.528	0.535
comGD/cglD	Streptococcus pneumoniae Rx1	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae D39	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae R6	57.48	88.194	0.507
comGD/cglD	Streptococcus mitis SK321	57.48	88.194	0.507
comGD/cglD	Streptococcus pneumoniae TIGR4	56.693	88.194	0.5
comYD	Streptococcus mutans UA140	52.308	90.278	0.472
comYD	Streptococcus mutans UA159	52.308	90.278	0.472
comGD	Lactococcus lactis subsp. cremoris KW2	39.568	96.528	0.382