Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQM67_RS09470 Genome accession   NZ_LS483383
Coordinates   1852888..1853904 (-) Length   338 a.a.
NCBI ID   WP_255209852.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847888..1858904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS09435 (NCTC12479_01827) - 1848846..1850039 (-) 1194 WP_005591541.1 acetate kinase -
  DQM67_RS09440 (NCTC12479_01828) comYH 1850075..1851040 (-) 966 WP_005591540.1 class I SAM-dependent methyltransferase Machinery gene
  DQM67_RS09445 (NCTC12479_01829) comGG 1851121..1851519 (-) 399 WP_005591539.1 competence type IV pilus minor pilin ComGG -
  DQM67_RS09450 (NCTC12479_01830) comGF/cglF 1851500..1851937 (-) 438 WP_005591538.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM67_RS09455 (NCTC12479_01831) comGE 1851921..1852214 (-) 294 WP_174263560.1 competence type IV pilus minor pilin ComGE -
  DQM67_RS09460 (NCTC12479_01832) comYD 1852180..1852614 (-) 435 WP_037586086.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM67_RS09465 (NCTC12479_01833) comYC 1852574..1852891 (-) 318 WP_005591535.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM67_RS09470 (NCTC12479_01834) comYB 1852888..1853904 (-) 1017 WP_255209852.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM67_RS09475 (NCTC12479_01835) comYA 1853852..1854793 (-) 942 WP_005591533.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM67_RS09480 (NCTC12479_01836) - 1854879..1855250 (-) 372 WP_005591532.1 DUF1033 family protein -
  DQM67_RS09485 (NCTC12479_01837) - 1855384..1856652 (-) 1269 WP_005591531.1 CapA family protein -
  DQM67_RS09495 (NCTC12479_01838) comW 1856896..1857123 (-) 228 WP_005592089.1 sigma(X)-activator ComW -
  DQM67_RS09500 (NCTC12479_01839) - 1857694..1858800 (-) 1107 WP_005591529.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38695.71 Da        Isoelectric Point: 9.4902

>NTDB_id=1139537 DQM67_RS09470 WP_255209852.1 1852888..1853904(-) (comYB) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MDISQMIKGRRKKLSTPKQKKIIELFRNLFTSGFHLAEIVDFLRRSALLEEAYVAEMRSGLAAGQSFSQIMKRLGFSDNV
VTQLSLSELHGNLNLSLGKIEDYLENLSKVRKKLIEVGTYPLMLLGFLVLIMLGLRNYLLPQLDSQNMATQFIHYLPQIF
LGGVLVICLLIGGGWFYYRKSSKMRFFSRLAKFPFVGALVRAYLTAYYAREWGNMIGQGLELSQIFLIMQDQPSQLFQEL
GRDLETALGAGQGYAEKVGTYPFFKKELALIIEYGEVKSKLGDELELYAEKTWEEFFLRINRAMNLIQPLVFVFVALVIV
LLYAAMLLPIYQNMEIQL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1139537 DQM67_RS09470 WP_255209852.1 1852888..1853904(-) (comYB) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGGACATATCACAGATGATCAAAGGCAGGCGGAAAAAATTATCTACGCCTAAGCAAAAGAAGATTATCGAGCTGTTCCG
CAATCTATTTACCAGCGGTTTCCATCTTGCGGAGATTGTCGATTTCCTACGGCGGAGTGCCCTTTTAGAGGAGGCCTATG
TCGCGGAAATGCGTTCGGGTTTGGCTGCTGGCCAGTCATTTTCCCAGATTATGAAGCGTTTAGGTTTTTCAGATAATGTG
GTCACCCAGCTATCTTTGTCTGAGTTGCACGGAAATCTAAATCTTAGTTTGGGTAAAATCGAAGATTATCTGGAAAATCT
ATCCAAGGTCCGTAAGAAATTGATTGAGGTGGGGACTTATCCCCTGATGCTGCTTGGGTTTCTAGTACTGATCATGCTGG
GCTTGCGTAATTATCTCCTGCCTCAGTTGGACAGTCAAAATATGGCTACTCAGTTTATTCATTATCTACCGCAAATCTTT
TTGGGAGGCGTTCTGGTGATTTGCTTACTGATTGGCGGAGGTTGGTTCTATTATCGCAAGAGCTCTAAGATGAGATTTTT
CAGCCGTTTGGCCAAGTTTCCTTTTGTTGGCGCCTTAGTGCGGGCCTACCTGACAGCCTACTATGCGCGTGAATGGGGCA
ATATGATTGGGCAAGGATTGGAATTGAGCCAGATCTTTCTTATCATGCAGGACCAGCCTTCTCAGCTCTTTCAGGAGCTG
GGACGAGACTTGGAGACGGCTCTAGGCGCAGGTCAGGGCTATGCCGAGAAGGTCGGCACCTACCCCTTTTTTAAGAAAGA
GCTGGCCTTGATCATCGAATATGGTGAGGTCAAGTCCAAGTTGGGTGACGAATTGGAATTGTATGCCGAAAAGACTTGGG
AAGAGTTTTTCCTGAGAATCAATCGTGCCATGAATTTGATTCAGCCTCTCGTCTTTGTCTTTGTCGCCCTTGTTATCGTT
TTACTTTATGCAGCCATGTTGCTGCCAATTTATCAGAATATGGAGATTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

70.92

99.704

0.707
  comGB/cglB Streptococcus mitis NCTC 12261

68.155

99.408

0.678
  comGB/cglB Streptococcus mitis SK321

67.857

99.408

0.675
  comGB/cglB Streptococcus pneumoniae TIGR4

67.56

99.408

0.672
  comGB/cglB Streptococcus pneumoniae R6

67.56

99.408

0.672
  comGB/cglB Streptococcus pneumoniae Rx1

67.56

99.408

0.672
  comGB/cglB Streptococcus pneumoniae D39

67.56

99.408

0.672
  comYB Streptococcus mutans UA140

60.568

93.787

0.568
  comYB Streptococcus mutans UA159

60.252

93.787

0.565
  comGB Lactococcus lactis subsp. cremoris KW2

50

98.817

0.494

Multiple sequence alignment