Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQM67_RS03445 Genome accession   NZ_LS483383
Coordinates   677847..678542 (+) Length   231 a.a.
NCBI ID   WP_005590661.1    Uniprot ID   A0AAV3ECM6
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 672847..683542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS03425 (NCTC12479_00655) - 673391..673654 (-) 264 WP_005590665.1 GIY-YIG nuclease family protein -
  DQM67_RS03430 (NCTC12479_00656) - 673644..674390 (-) 747 WP_005590664.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQM67_RS03435 (NCTC12479_00657) - 674483..676822 (-) 2340 WP_005590663.1 cation-translocating P-type ATPase -
  DQM67_RS03440 (NCTC12479_00658) - 676980..677720 (+) 741 WP_005590662.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  DQM67_RS03445 (NCTC12479_00659) comEA/celA/cilE 677847..678542 (+) 696 WP_005590661.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQM67_RS03450 (NCTC12479_00660) comEC/celB 678523..680763 (+) 2241 WP_005590660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQM67_RS03455 (NCTC12479_00661) - 680870..681805 (+) 936 WP_005592493.1 DUF805 domain-containing protein -
  DQM67_RS03460 (NCTC12479_00662) - 682093..682563 (+) 471 WP_174263569.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24722.73 Da        Isoelectric Point: 4.7380

>NTDB_id=1139500 DQM67_RS03445 WP_005590661.1 677847..678542(+) (comEA/celA/cilE) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MFEEIVEKLKEYKIFVGLSLLGIIFAGFFLLKGNAQPQNQVSALAQEVVTSASSETNAEKRSANQEKIDSEKDMDSEESE
KEVTVDVKGAVKNPGVYQLRAGARVHDALQKAGGLLPDAESKSINQAQKLTDEAVVYVAKVGEEGADVTQASQTPAGNGG
TEKGKSDLVNLNTATEAELQTVSGIGQKKAQDIIAYREANGKFKSVDELKNVSGIGAKTLEKLKDYVTVDK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1139500 DQM67_RS03445 WP_005590661.1 677847..678542(+) (comEA/celA/cilE) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGTTTGAAGAAATAGTTGAGAAATTAAAGGAATACAAGATTTTTGTTGGACTTTCCTTGTTGGGAATCATCTTTGCTGG
CTTTTTCTTGCTGAAGGGCAACGCTCAGCCACAGAATCAGGTCAGCGCACTGGCTCAGGAAGTGGTTACATCAGCTTCAT
CTGAAACCAATGCAGAAAAAAGAAGTGCGAATCAAGAAAAAATCGATTCAGAAAAAGATATGGATTCAGAGGAATCTGAG
AAAGAAGTCACCGTTGATGTCAAAGGTGCTGTCAAAAATCCAGGAGTTTATCAGTTGCGGGCAGGAGCGCGTGTGCATGA
TGCCCTACAAAAAGCAGGTGGCCTATTGCCAGATGCCGAGTCAAAATCCATCAACCAAGCACAAAAATTAACAGATGAGG
CAGTTGTCTATGTAGCTAAAGTCGGTGAGGAAGGAGCAGATGTGACGCAAGCTAGTCAGACGCCCGCTGGAAATGGGGGA
ACAGAGAAAGGAAAGTCTGACTTGGTCAATCTCAATACGGCGACCGAAGCTGAACTTCAGACAGTTTCAGGCATCGGTCA
AAAGAAAGCGCAAGACATCATTGCTTATCGGGAAGCCAATGGTAAGTTTAAGTCAGTAGACGAGCTGAAAAATGTTTCAG
GAATCGGTGCAAAAACCTTAGAAAAGTTAAAAGACTATGTCACAGTGGATAAATAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(167-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.528

99.134

0.511
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.655

99.134

0.502
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.655

99.134

0.502
  comEA/celA/cilE Streptococcus pneumoniae D39

50.655

99.134

0.502
  comEA/celA/cilE Streptococcus pneumoniae R6

50.655

99.134

0.502
  comEA/celA/cilE Streptococcus mitis SK321

50.655

99.134

0.502
  comEA Streptococcus thermophilus LMD-9

44.444

100

0.45
  comEA Lactococcus lactis subsp. cremoris KW2

38.889

100

0.394
  comEA Latilactobacillus sakei subsp. sakei 23K

34.413

100

0.368

Multiple sequence alignment