Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM60_RS00340 Genome accession   NZ_LS483366
Coordinates   57515..58786 (+) Length   423 a.a.
NCBI ID   WP_084871099.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52515..63786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS00310 (NCTC7366_00061) - 52841..53278 (-) 438 WP_014633775.1 LytTR family DNA-binding domain-containing protein -
  DQM60_RS00315 (NCTC7366_00062) - 53457..53762 (+) 306 WP_002886319.1 hypothetical protein -
  DQM60_RS00320 (NCTC7366_00063) mutL 53812..55755 (+) 1944 WP_084869677.1 DNA mismatch repair endonuclease MutL -
  DQM60_RS00325 (NCTC7366_00064) - 55886..56107 (+) 222 WP_002886321.1 hypothetical protein -
  DQM60_RS00330 (NCTC7366_00065) ruvA 56265..56855 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA -
  DQM60_RS00335 (NCTC7366_00066) - 56864..57418 (+) 555 WP_084871098.1 DNA-3-methyladenine glycosylase I -
  DQM60_RS00340 (NCTC7366_00067) cinA 57515..58786 (+) 1272 WP_084871099.1 competence/damage-inducible protein A Machinery gene
  DQM60_RS00345 (NCTC7366_00068) recA 58822..59961 (+) 1140 WP_014633715.1 recombinase RecA Machinery gene
  DQM60_RS00350 (NCTC7366_00069) - 60092..61078 (+) 987 WP_045002009.1 IS30 family transposase -
  DQM60_RS00355 (NCTC7366_00070) spx 61216..61614 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45779.92 Da        Isoelectric Point: 5.1868

>NTDB_id=1138746 DQM60_RS00340 WP_084871099.1 57515..58786(+) (cinA) [Streptococcus salivarius strain NCTC7366]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNESRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGVALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDNLI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1138746 DQM60_RS00340 WP_084871099.1 57515..58786(+) (cinA) [Streptococcus salivarius strain NCTC7366]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTACTTTCACACAGCAGTAGGAGACAATGAAAGTCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATTCTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACA
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGAGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTTAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGCACCATGGCAAGACCATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAGTTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACAACTTGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.179

99.054

0.745
  cinA Streptococcus mitis NCTC 12261

74.702

99.054

0.74
  cinA Streptococcus pneumoniae TIGR4

73.747

99.054

0.73
  cinA Streptococcus pneumoniae Rx1

73.508

99.054

0.728
  cinA Streptococcus pneumoniae R6

73.508

99.054

0.728
  cinA Streptococcus pneumoniae D39

73.27

99.054

0.726
  cinA Streptococcus mutans UA159

71.158

100

0.712
  cinA Streptococcus suis isolate S10

55.529

98.345

0.546
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.527

0.447

Multiple sequence alignment