Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQM55_RS00715 Genome accession   NZ_LS483364
Coordinates   127763..129019 (+) Length   418 a.a.
NCBI ID   WP_049552831.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122763..134019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS00675 (NCTC11086_00131) - 123270..123791 (-) 522 WP_168956407.1 RDD family protein -
  DQM55_RS00680 (NCTC11086_00132) - 123775..124278 (-) 504 WP_004185136.1 helix-turn-helix domain-containing protein -
  DQM55_RS00685 (NCTC11086_00133) ruvA 124446..125036 (+) 591 WP_009660167.1 Holliday junction branch migration protein RuvA -
  DQM55_RS00690 (NCTC11086_00134) - 125046..125618 (+) 573 WP_111675155.1 DNA-3-methyladenine glycosylase I -
  DQM55_RS00695 (NCTC11086_00135) - 125628..126476 (-) 849 WP_111675156.1 helix-turn-helix domain-containing protein -
  DQM55_RS00705 (NCTC11086_00137) - 127075..127353 (+) 279 WP_223310420.1 bacteriocin immunity protein -
  DQM55_RS00715 (NCTC11086_00138) cinA 127763..129019 (+) 1257 WP_049552831.1 competence/damage-inducible protein A Machinery gene
  DQM55_RS00720 (NCTC11086_00139) recA 129078..130226 (+) 1149 WP_111675157.1 recombinase RecA Machinery gene
  DQM55_RS00725 (NCTC11086_00140) spx 130312..130710 (+) 399 WP_002894078.1 transcriptional regulator Spx -
  DQM55_RS00730 (NCTC11086_00141) - 130845..131417 (+) 573 WP_111675158.1 SP0191 family lipoprotein -
  DQM55_RS00735 (NCTC11086_00142) - 131523..132065 (+) 543 WP_111675159.1 hypothetical protein -
  DQM55_RS00740 (NCTC11086_00143) - 132243..132509 (+) 267 WP_002894075.1 IreB family regulatory phosphoprotein -
  DQM55_RS00745 (NCTC11086_00144) ruvX 132509..132928 (+) 420 WP_002899275.1 Holliday junction resolvase RuvX -
  DQM55_RS00750 (NCTC11086_00145) - 132953..133264 (+) 312 WP_002894073.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44878.94 Da        Isoelectric Point: 4.5700

>NTDB_id=1138643 DQM55_RS00715 WP_049552831.1 127763..129019(+) (cinA) [Streptococcus sanguinis strain NCTC11086]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSVLEIAQGRNNLIILTGGLGPTEDDLTKQT
LAKFLGRELIFDSQAVEKLDRFFASRPDYARTPNNERQAQLVEGSTPLPNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLSTGQKLYSRVLRFFGIGESQLVTILSEMIEQQSDPTIAPYAKTGEVTLRLSTKALSQVEADTKFEAVEKEI
LEHKTFEGQSLSEIFYGYGDDNSLAQVAFELLKSQGKTISAAESLTAGLFQATLADFAGASSIFSGGFVTYSMEEKSRML
DIPLGDLEEHGVVSAFTAGKMAEQARKLTESDLAVSLTGVAGPDSLEDHPAGTVFIGLASASGTETIKVNIAGRSRRDVR
KIAVLHAFNLVRKTLLNS

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1138643 DQM55_RS00715 WP_049552831.1 127763..129019(+) (cinA) [Streptococcus sanguinis strain NCTC11086]
ATGAAAGCAGAAATTATTGCTGTGGGCACTGAGATTCTGACGGGTCAGATTGTCAATACCAATGCCCAATTTTTATCTGA
AAAACTTGCGAGTCTGGGGATTGATGTTTATTTTCAGACAGCAGTAGGGGACAATGAAAATCGTCTCCTATCTGTTTTGG
AAATTGCTCAAGGGCGCAATAATCTGATTATCCTAACAGGAGGCTTGGGGCCAACAGAGGATGATTTGACCAAGCAGACC
TTGGCTAAGTTCTTAGGACGTGAGCTCATTTTTGACTCACAGGCTGTGGAAAAGCTGGATCGCTTTTTTGCTAGCCGGCC
AGATTATGCTCGAACGCCCAATAATGAGCGTCAGGCCCAGCTGGTCGAAGGTTCGACTCCGTTACCAAATGCGACTGGTT
TAGCTGTCGGAGGATTGTTAGAAGCAGACGGAGTGACCTATGTAGTCCTGCCTGGCCCGCCTAGTGAGCTTAAGCCTATG
GTTAATAATGAGTTGGTTCCCCTCTTATCCACAGGCCAGAAATTATATTCACGGGTGCTGCGTTTCTTTGGTATCGGCGA
GAGTCAGCTAGTGACTATTTTGTCAGAGATGATTGAGCAGCAGAGTGACCCCACCATTGCTCCTTATGCAAAGACAGGGG
AAGTTACCCTACGACTGTCCACCAAGGCTCTGAGTCAGGTAGAAGCTGACACCAAGTTTGAGGCTGTGGAAAAGGAAATT
TTGGAACATAAGACTTTTGAGGGGCAATCACTGTCAGAGATTTTCTATGGTTACGGGGATGACAATTCCTTGGCACAGGT
GGCTTTTGAGTTGCTGAAGAGTCAAGGGAAGACGATTTCGGCGGCGGAGAGTCTGACAGCAGGCCTCTTTCAAGCGACCT
TGGCTGATTTTGCTGGAGCCTCTTCCATTTTTTCAGGTGGCTTTGTCACCTACAGCATGGAGGAAAAGAGCCGGATGCTG
GATATTCCGTTGGGAGACTTGGAGGAGCATGGAGTTGTTTCAGCTTTTACGGCAGGGAAAATGGCAGAGCAGGCTAGAAA
GCTGACCGAAAGCGACTTAGCTGTCAGTTTGACAGGTGTGGCAGGCCCAGATTCACTGGAAGATCATCCTGCAGGGACCG
TTTTTATCGGTTTAGCTAGTGCTTCAGGAACGGAAACTATTAAGGTCAATATTGCTGGACGCAGTCGTCGTGATGTGCGG
AAAATTGCTGTTCTGCACGCCTTCAACCTAGTACGAAAAACTTTATTAAATAGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-241)

Competence-damaged protein (CinA)

(262-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

78.417

99.761

0.782
  cinA Streptococcus mitis NCTC 12261

77.938

99.761

0.778
  cinA Streptococcus pneumoniae TIGR4

77.218

99.761

0.77
  cinA Streptococcus pneumoniae Rx1

77.218

99.761

0.77
  cinA Streptococcus pneumoniae R6

77.218

99.761

0.77
  cinA Streptococcus pneumoniae D39

76.978

99.761

0.768
  cinA Streptococcus mutans UA159

74.88

100

0.749
  cinA Streptococcus suis isolate S10

55.288

99.522

0.55
  cinA Bacillus subtilis subsp. subtilis str. 168

46.651

100

0.467

Multiple sequence alignment