Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   DQL23_RS04660 Genome accession   NZ_LS483341
Coordinates   980225..980890 (+) Length   221 a.a.
NCBI ID   WP_060554135.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975225..985890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS04640 (NCTC7865_00930) - 975472..976218 (-) 747 WP_060554131.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQL23_RS04645 (NCTC7865_00931) - 976323..978692 (-) 2370 WP_060554132.1 cation-translocating P-type ATPase -
  DQL23_RS04650 (NCTC7865_00932) - 978822..979562 (+) 741 WP_060554133.1 lysophospholipid acyltransferase family protein -
  DQL23_RS04655 (NCTC7865_00933) - 979601..980128 (+) 528 WP_060554134.1 HXXEE domain-containing protein -
  DQL23_RS04660 (NCTC7865_00934) comEA/celA/cilE 980225..980890 (+) 666 WP_060554135.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL23_RS04665 (NCTC7865_00935) comEC/celB 980874..983114 (+) 2241 WP_060554136.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DQL23_RS04670 (NCTC7865_00936) holA 983205..984242 (+) 1038 WP_060554137.1 DNA polymerase III subunit delta -
  DQL23_RS04675 (NCTC7865_00937) - 984315..984920 (+) 606 WP_045503938.1 superoxide dismutase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23441.17 Da        Isoelectric Point: 4.7123

>NTDB_id=1137488 DQL23_RS04660 WP_060554135.1 980225..980890(+) (comEA/celA/cilE) [Streptococcus gordonii strain NCTC7865]
MIEDLIEKAKQYKIALGLGLLGVIAAGFILLQGRDQGGTDVQQLTEQTSSSSSYMNEKSNKSNEISQAETEDQLVTVDVK
GAVKKPGVYQLQSNSRVHDALEKAGGLTDEADLKSVNQAQKLSDEAVVYVAKVGENAVDVTTSAPASATSGTGQAKSALV
NLNTATEADFQTISGIGQKRAQDIIAYREANGRFKSVDDLKNVSGIGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1137488 DQL23_RS04660 WP_060554135.1 980225..980890(+) (comEA/celA/cilE) [Streptococcus gordonii strain NCTC7865]
ATGATAGAAGATTTGATAGAAAAAGCAAAGCAATATAAAATTGCTCTAGGTCTTGGTCTATTGGGGGTGATTGCAGCAGG
CTTTATTTTACTACAGGGAAGAGACCAAGGGGGGACAGATGTTCAGCAATTGACAGAGCAAACTTCTTCCTCTAGTTCAT
ATATGAATGAAAAAAGTAACAAGAGTAATGAGATCAGTCAAGCCGAGACAGAAGATCAGTTGGTTACAGTTGATGTCAAG
GGTGCGGTAAAAAAGCCTGGTGTCTATCAGTTGCAGTCTAATAGTCGGGTTCATGATGCTTTAGAAAAGGCAGGTGGTTT
AACTGACGAAGCTGACTTAAAATCCGTCAATCAGGCTCAGAAACTGAGCGACGAGGCGGTAGTATATGTAGCCAAGGTCG
GAGAAAATGCTGTAGATGTTACGACGAGTGCCCCTGCAAGTGCAACATCAGGAACGGGCCAGGCGAAATCCGCGCTGGTC
AATCTAAATACAGCAACAGAAGCAGACTTTCAAACTATTTCAGGCATCGGACAAAAACGAGCTCAGGATATTATTGCTTA
CCGAGAAGCCAATGGTAGATTTAAGTCTGTAGATGATCTAAAAAATGTATCAGGTATTGGGGCCAAAACTCTGGAAAAAT
TAAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(158-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.679

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.107

100

0.498
  comEA/celA/cilE Streptococcus pneumoniae D39

49.107

100

0.498
  comEA/celA/cilE Streptococcus pneumoniae R6

49.107

100

0.498
  comEA/celA/cilE Streptococcus mitis NCTC 12261

49.545

99.548

0.493
  comEA/celA/cilE Streptococcus mitis SK321

47.727

99.548

0.475
  comEA Latilactobacillus sakei subsp. sakei 23K

36.327

100

0.403
  comEA Streptococcus thermophilus LMD-9

57.432

66.968

0.385

Multiple sequence alignment