Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DQL47_RS09765 Genome accession   NZ_LS483328
Coordinates   2037195..2038466 (-) Length   423 a.a.
NCBI ID   WP_111690495.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2032195..2043466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS09740 (NCTC12090_01973) - 2034084..2034383 (-) 300 WP_021321220.1 DUF1292 domain-containing protein -
  DQL47_RS09745 (NCTC12090_01974) ruvX 2034393..2034812 (-) 420 WP_012678687.1 Holliday junction resolvase RuvX -
  DQL47_RS09750 (NCTC12090_01975) - 2034809..2035078 (-) 270 WP_012516439.1 IreB family regulatory phosphoprotein -
  DQL47_RS09755 (NCTC12090_01976) spx 2035191..2035589 (-) 399 WP_012516440.1 transcriptional regulator Spx -
  DQL47_RS09760 (NCTC12090_01977) recA 2035965..2037101 (-) 1137 WP_012678688.1 recombinase RecA Machinery gene
  DQL47_RS09765 (NCTC12090_01978) cinA 2037195..2038466 (-) 1272 WP_111690495.1 competence/damage-inducible protein A Machinery gene
  DQL47_RS09770 (NCTC12090_01979) - 2039152..2039442 (-) 291 WP_012516443.1 hypothetical protein -
  DQL47_RS09775 (NCTC12090_01980) - 2039436..2040008 (-) 573 WP_012516444.1 phosphlipase A2 SlaA -
  DQL47_RS09780 (NCTC12090_01981) - 2040305..2041150 (+) 846 Protein_1875 helix-turn-helix domain-containing protein -
  DQL47_RS09785 (NCTC12090_01982) - 2041595..2042146 (-) 552 WP_038674690.1 DNA-3-methyladenine glycosylase I -
  DQL47_RS09790 (NCTC12090_01983) ruvA 2042156..2042752 (-) 597 WP_012516448.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46001.67 Da        Isoelectric Point: 5.1820

>NTDB_id=1136772 DQL47_RS09765 WP_111690495.1 2037195..2038466(-) (cinA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIDIASQRSDLVILCGGLGPTDDDLTKQT
LAKYLGKALVFDEQAGQKLDTFFAHRKHTARTPNNQRQAQLIEGSVALQNQTGLAVGGLITVDGVTYVVLPGPPSELKPM
VKNELVPLLSASHASLYSRVLRFFGIGESQLVTALEDLIKYQTDPTIAPYAKTGEVTLRLSTKADHQALANERLDQLELQ
LLSIRTIDNQPLRRLLYGYGEDNSLARETFELLKRSGKTITAAESLTAGLFQAQLTDFAGASQVFNGGFITYSIEEKARM
LGIPLVELQRHGVVSSFTAEQMAAQARCLTDSDIGIGLTGVAGPEELEEQPAGTVFIGLATKNKVESLKVVIGGRSRLDV
RYIATLYAFNMVRKTLLKSENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1136772 DQL47_RS09765 WP_111690495.1 2037195..2038466(-) (cinA) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGAAAGCTGAACTCATTGCGGTGGGAACCGAGATTCTGACTGGTCAGATTGTGAATACCAATGCTCAATTTTTATCAGA
AAAAATGGCAGAGCTTGGCATTGATGTTTATTTTCAAACAGCTGTAGGAGATAATGAAGAGCGTTTGCTTTCTGTTATTG
ATATTGCTAGCCAGCGAAGTGATTTAGTGATTTTATGTGGTGGTCTTGGTCCAACAGATGATGATCTAACGAAGCAGACC
TTAGCTAAGTATCTGGGAAAAGCTTTGGTCTTTGATGAGCAGGCAGGTCAAAAATTAGATACTTTTTTTGCACATCGTAA
GCATACTGCTAGGACACCAAACAACCAACGTCAGGCGCAGCTGATTGAAGGCTCTGTTGCTTTGCAAAATCAAACAGGAC
TTGCAGTAGGTGGCTTGATCACTGTAGATGGGGTAACCTATGTTGTCTTACCAGGGCCTCCAAGTGAGTTAAAGCCTATG
GTAAAAAATGAGCTGGTACCCCTTCTTTCAGCTAGTCACGCTAGTCTGTACTCAAGAGTGCTGCGCTTTTTTGGCATTGG
TGAGAGTCAACTGGTGACTGCTCTGGAGGATTTGATTAAGTATCAAACAGATCCTACTATTGCTCCTTATGCAAAGACCG
GCGAGGTAACACTGCGACTATCCACAAAGGCTGATCATCAAGCATTAGCTAATGAAAGGCTGGATCAGCTGGAGTTACAG
CTCTTATCCATAAGAACCATAGATAATCAACCCTTACGGCGTTTGCTTTATGGCTATGGGGAGGATAATTCCTTGGCACG
TGAGACCTTTGAGCTATTGAAGCGAAGTGGCAAGACGATAACAGCAGCTGAAAGCTTGACAGCAGGACTGTTTCAAGCCC
AGCTAACTGATTTTGCGGGAGCTTCACAGGTGTTTAACGGTGGCTTTATCACCTACAGCATTGAAGAAAAAGCAAGAATG
CTTGGTATTCCATTGGTTGAGCTCCAAAGGCATGGTGTTGTGAGCTCTTTTACAGCTGAGCAAATGGCTGCGCAGGCACG
TTGCTTGACCGATTCAGATATCGGTATTGGTCTAACAGGTGTTGCTGGTCCAGAGGAACTCGAGGAGCAGCCAGCAGGAA
CAGTTTTCATTGGCCTTGCCACTAAGAATAAGGTAGAATCTCTTAAAGTTGTCATAGGAGGTCGCAGCCGTTTGGACGTG
CGGTACATTGCTACTCTGTACGCTTTTAATATGGTTCGTAAAACTTTATTAAAATCAGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

70.922

100

0.709
  cinA Streptococcus mitis NCTC 12261

70.743

98.582

0.697
  cinA Streptococcus mitis SK321

70.743

98.582

0.697
  cinA Streptococcus pneumoniae TIGR4

70.264

98.582

0.693
  cinA Streptococcus pneumoniae Rx1

70.264

98.582

0.693
  cinA Streptococcus pneumoniae R6

70.264

98.582

0.693
  cinA Streptococcus pneumoniae D39

70.024

98.582

0.69
  cinA Streptococcus suis isolate S10

54.177

99.054

0.537
  cinA Bacillus subtilis subsp. subtilis str. 168

47.129

98.818

0.466

Multiple sequence alignment