Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | XFUD_RS11810 | Genome accession | NZ_CP009790 |
| Coordinates | 2415000..2415446 (+) | Length | 148 a.a. |
| NCBI ID | WP_010894960.1 | Uniprot ID | Q9PAH9 |
| Organism | Xylella fastidiosa strain U24d | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2410000..2420446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFUD_RS11790 (XFUD_11060) | - | 2410247..2411584 (+) | 1338 | WP_023907057.1 | HAMP domain-containing sensor histidine kinase | - |
| XFUD_RS11795 (XFUD_11065) | coaE | 2411851..2412474 (-) | 624 | WP_023907058.1 | dephospho-CoA kinase | - |
| XFUD_RS11800 (XFUD_11070) | pilD | 2412486..2413349 (-) | 864 | WP_010894958.1 | A24 family peptidase | Machinery gene |
| XFUD_RS11805 (XFUD_11075) | pilC | 2413356..2414558 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| XFUD_RS11810 (XFUD_11080) | pilA/pilAI | 2415000..2415446 (+) | 447 | WP_010894960.1 | pilin | Machinery gene |
| XFUD_RS11820 (XFUD_11090) | pilA/pilAI | 2416743..2417189 (+) | 447 | WP_010894963.1 | pilin | Machinery gene |
| XFUD_RS11825 (XFUD_11095) | - | 2417627..2417857 (-) | 231 | WP_010894964.1 | hypothetical protein | - |
| XFUD_RS11830 (XFUD_11100) | pilB | 2418009..2419742 (+) | 1734 | WP_010894965.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15363.49 Da Isoelectric Point: 8.4988
>NTDB_id=113650 XFUD_RS11810 WP_010894960.1 2415000..2415446(+) (pilA/pilAI) [Xylella fastidiosa strain U24d]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKVDAAGTANITCKVKGNSQVNDKTIAWDRTSDNSAGTNGVNNGGVWTCSSTVTSDALRPSGCIASK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKSTSNASDIGLRTDTTRCGI
TVKVDAAGTANITCKVKGNSQVNDKTIAWDRTSDNSAGTNGVNNGGVWTCSSTVTSDALRPSGCIASK
Nucleotide
Download Length: 447 bp
>NTDB_id=113650 XFUD_RS11810 WP_010894960.1 2415000..2415446(+) (pilA/pilAI) [Xylella fastidiosa strain U24d]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTCCTAGCAGCCATCGCGCT
GCCTATGTACCAAAATTATGTCGCCAGATCCCAACTCACCGCGGCACTGGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGCTTGGGATCGTACCTCCGATAACTCTGCAGGCACCAATGGTGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCTCTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTCCTAGCAGCCATCGCGCT
GCCTATGTACCAAAATTATGTCGCCAGATCCCAACTCACCGCGGCACTGGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGAGTACATCCAACGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGGATT
ACCGTTAAAGTCGATGCCGCTGGCACTGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAATGATAAAACCAT
CGCTTGGGATCGTACCTCCGATAACTCTGCAGGCACCAATGGTGTCAATAATGGAGGTGTGTGGACCTGCTCCTCCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCTCTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.857 |
99.324 |
0.426 |
| pilA | Pseudomonas aeruginosa PAK |
38.994 |
100 |
0.419 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.177 |
99.324 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
38.71 |
100 |
0.405 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.71 |
100 |
0.405 |
| pilA | Vibrio cholerae C6706 |
38.71 |
100 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
39.333 |
100 |
0.399 |