Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   XFUD_RS11800 Genome accession   NZ_CP009790
Coordinates   2412486..2413349 (-) Length   287 a.a.
NCBI ID   WP_010894958.1    Uniprot ID   Q9PAI1
Organism   Xylella fastidiosa strain U24d     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407486..2418349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFUD_RS11780 (XFUD_11050) rimK 2408028..2408892 (+) 865 Protein_2175 30S ribosomal protein S6--L-glutamate ligase -
  XFUD_RS11785 (XFUD_11055) - 2409577..2410254 (+) 678 WP_010894955.1 response regulator transcription factor -
  XFUD_RS11790 (XFUD_11060) - 2410247..2411584 (+) 1338 WP_023907057.1 HAMP domain-containing sensor histidine kinase -
  XFUD_RS11795 (XFUD_11065) coaE 2411851..2412474 (-) 624 WP_023907058.1 dephospho-CoA kinase -
  XFUD_RS11800 (XFUD_11070) pilD 2412486..2413349 (-) 864 WP_010894958.1 A24 family peptidase Machinery gene
  XFUD_RS11805 (XFUD_11075) pilC 2413356..2414558 (-) 1203 WP_010894959.1 type II secretion system F family protein Machinery gene
  XFUD_RS11810 (XFUD_11080) pilA/pilAI 2415000..2415446 (+) 447 WP_010894960.1 pilin Machinery gene
  XFUD_RS11820 (XFUD_11090) pilA/pilAI 2416743..2417189 (+) 447 WP_010894963.1 pilin Machinery gene
  XFUD_RS11825 (XFUD_11095) - 2417627..2417857 (-) 231 WP_010894964.1 hypothetical protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31776.90 Da        Isoelectric Point: 8.6709

>NTDB_id=113648 XFUD_RS11800 WP_010894958.1 2412486..2413349(-) (pilD) [Xylella fastidiosa strain U24d]
MAFLDQHPGLGYPLASGLGLLLGSFLNVVILRLPRRLEWQWKRDAREILEMPDIYDPPPPGIVVEPSHDPVTGDRLKWWE
NIPVLSWLLLRGRSRYSGKSISLQYPLVELLTCLLVLASVWRFGFGWHGFGAIVFSCFLVALAGIDLRTRLLPDQLTLML
MWLGLIGSTDNLFMAAKPALLGAVVGYLSLWIVAALFKLIFNKEGMGHGDFKMLAALGAWCGLKGILPIILISSLAGVVL
GSVWLVVRGHNRTTMIPFGPYLAVGGWIVFFFGDQIIHAYLELLSIG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=113648 XFUD_RS11800 WP_010894958.1 2412486..2413349(-) (pilD) [Xylella fastidiosa strain U24d]
ATGGCATTTCTTGACCAGCACCCCGGTCTCGGTTATCCCCTTGCGTCCGGTTTGGGGTTGTTGCTTGGTAGTTTTCTCAA
TGTGGTGATCCTGCGTTTGCCGCGCCGTTTGGAATGGCAATGGAAGCGCGATGCGCGCGAAATCCTGGAGATGCCGGACA
TTTATGATCCGCCACCACCGGGAATTGTGGTCGAGCCTTCCCACGATCCAGTGACTGGTGATCGGTTGAAGTGGTGGGAA
AACATTCCGGTGCTTAGCTGGTTGTTGCTACGTGGACGTTCGCGTTACAGCGGCAAGTCAATCTCGTTGCAGTATCCGTT
GGTCGAATTGCTGACTTGCCTGCTGGTGCTGGCCAGTGTTTGGCGTTTTGGATTCGGTTGGCATGGTTTTGGGGCAATTG
TGTTCAGTTGTTTCCTGGTTGCGTTGGCTGGGATTGATTTGCGTACTCGGCTCTTACCTGACCAGTTAACTTTAATGCTC
ATGTGGCTGGGTTTGATTGGATCGACGGATAACTTGTTTATGGCAGCCAAACCTGCGTTATTGGGGGCTGTAGTTGGTTA
TTTATCTCTGTGGATTGTGGCGGCGTTGTTCAAACTGATCTTTAACAAGGAAGGGATGGGCCATGGTGACTTCAAAATGC
TGGCCGCGCTTGGGGCATGGTGTGGGTTGAAGGGTATTCTCCCGATCATTTTGATTTCATCACTGGCTGGAGTGGTATTG
GGCTCCGTTTGGCTTGTTGTGCGTGGTCATAACCGTACAACGATGATTCCGTTTGGACCTTATCTGGCAGTTGGTGGATG
GATCGTGTTCTTTTTCGGCGATCAGATCATCCATGCTTATCTGGAGCTATTAAGTATCGGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PAI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

42.403

98.606

0.418
  pilD Vibrio campbellii strain DS40M4

41.754

99.303

0.415
  pilD Acinetobacter nosocomialis M2

42.049

98.606

0.415
  pilD Acinetobacter baumannii D1279779

42.049

98.606

0.415
  pilD Neisseria gonorrhoeae MS11

44.03

93.38

0.411