Detailed information NTG1135662

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: DQL55_RS06680
• Genome accession: NZ_LS483304
• Coordinates: 1396115..1396435 (+)
• Length: 106 a.a.
• NCBI ID: WP_039645583.1
• Uniprot ID: A0A0A8HQY4
• Organism: Staphylococcus hyicus strain NCTC10350
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1391115..1401435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL55_RS06650 (NCTC10350_01373)	-	1391900..1392103 (+)	204	WP_039645571.1	YqgQ family protein	-
DQL55_RS06655 (NCTC10350_01374)	-	1392100..1393086 (+)	987	WP_039645573.1	ROK family glucokinase	-
DQL55_RS06660 (NCTC10350_01375)	-	1393088..1393399 (+)	312	WP_039645576.1	MTH1187 family thiamine-binding protein	-
DQL55_RS06665 (NCTC10350_01376)	-	1393414..1394037 (+)	624	WP_039645578.1	MBL fold metallo-hydrolase	-
DQL55_RS06670 (NCTC10350_01377)	comGA	1394093..1395067 (+)	975	WP_039645580.1	competence type IV pilus ATPase ComGA	Machinery gene
DQL55_RS06675 (NCTC10350_01378)	comGB	1395036..1396103 (+)	1068	WP_039645581.1	competence type IV pilus assembly protein ComGB	-
DQL55_RS06680 (NCTC10350_01379)	comGC	1396115..1396435 (+)	321	WP_039645583.1	competence type IV pilus major pilin ComGC	Machinery gene
DQL55_RS06685 (NCTC10350_01380)	comGD	1396425..1396856 (+)	432	WP_231912771.1	competence type IV pilus minor pilin ComGD	-
DQL55_RS06690 (NCTC10350_01381)	-	1397049..1397531 (+)	483	WP_039645587.1	competence type IV pilus minor pilin ComGF	-
DQL55_RS06695 (NCTC10350_01382)	-	1397515..1397712 (+)	198	WP_039645590.1	hypothetical protein	-
DQL55_RS06700	-	1397690..1398220 (+)	531	WP_039645592.1	shikimate kinase	-
DQL55_RS06705 (NCTC10350_01384)	gcvT	1398375..1399466 (+)	1092	WP_039645594.1	glycine cleavage system aminomethyltransferase GcvT	-
DQL55_RS06710 (NCTC10350_01385)	gcvPA	1399478..1400827 (+)	1350	WP_039645597.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 106 a.a.
• Molecular weight: 11838.11 Da
• Isoelectric Point: 9.5056

>NTDB_id=1135662 DQL55_RS06680 WP_039645583.1 1396115..1396435(+) (comGC) [Staphylococcus hyicus strain NCTC10350]
MLKIINILKNKKGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCAAQLKLVDSQIEAYTLKYNRKPTSIDELIQE
GYIKDNQKNCKSGETITIRGGEAVVS

Nucleotide

• Length: 321 bp

>NTDB_id=1135662 DQL55_RS06680 WP_039645583.1 1396115..1396435(+) (comGC) [Staphylococcus hyicus strain NCTC10350]
ATGCTTAAGATCATTAATATATTAAAAAACAAAAAAGGGTTTACTTTAATCGAAATGTTATTGGTTTTACTCATCATTAG
TGTTTTATTAATATTAATAATTCCTAATATAGCCAAACAATCTGAGCACATTCAAAAGACTGGATGCGCGGCACAACTTA
AACTCGTAGACAGTCAAATTGAAGCTTACACTTTAAAATACAACCGTAAGCCAACATCAATTGATGAGCTAATTCAAGAA
GGATATATTAAAGATAATCAAAAAAACTGTAAAAGTGGGGAAACTATCACAATTCGTGGTGGCGAAGCTGTTGTCTCATA
A

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (9-33)

3D structure

• AlphaFold DB: A0A0A8HQY4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	68.932	97.17	0.67
comGC	Staphylococcus aureus MW2	68.932	97.17	0.67
comGC	Bacillus subtilis subsp. subtilis str. 168	44.792	90.566	0.406
comGC/cglC	Streptococcus mitis SK321	47.191	83.962	0.396
comGC/cglC	Streptococcus mitis NCTC 12261	47.191	83.962	0.396
comGC/cglC	Streptococcus pneumoniae R6	46.067	83.962	0.387
comGC/cglC	Streptococcus pneumoniae Rx1	46.067	83.962	0.387
comGC/cglC	Streptococcus pneumoniae TIGR4	46.067	83.962	0.387
comGC/cglC	Streptococcus pneumoniae D39	46.067	83.962	0.387
comYC	Streptococcus suis isolate S10	51.316	71.698	0.368