Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | DQL55_RS06670 | Genome accession | NZ_LS483304 |
| Coordinates | 1394093..1395067 (+) | Length | 324 a.a. |
| NCBI ID | WP_039645580.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain NCTC10350 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1389093..1400067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL55_RS06635 (NCTC10350_01370) | rpmG | 1389625..1389789 (+) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
| DQL55_RS06640 (NCTC10350_01371) | - | 1389902..1390441 (+) | 540 | WP_039645567.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DQL55_RS06645 (NCTC10350_01372) | - | 1390459..1391898 (+) | 1440 | WP_039645569.1 | rhomboid family intramembrane serine protease | - |
| DQL55_RS06650 (NCTC10350_01373) | - | 1391900..1392103 (+) | 204 | WP_039645571.1 | YqgQ family protein | - |
| DQL55_RS06655 (NCTC10350_01374) | - | 1392100..1393086 (+) | 987 | WP_039645573.1 | ROK family glucokinase | - |
| DQL55_RS06660 (NCTC10350_01375) | - | 1393088..1393399 (+) | 312 | WP_039645576.1 | MTH1187 family thiamine-binding protein | - |
| DQL55_RS06665 (NCTC10350_01376) | - | 1393414..1394037 (+) | 624 | WP_039645578.1 | MBL fold metallo-hydrolase | - |
| DQL55_RS06670 (NCTC10350_01377) | comGA | 1394093..1395067 (+) | 975 | WP_039645580.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL55_RS06675 (NCTC10350_01378) | comGB | 1395036..1396103 (+) | 1068 | WP_039645581.1 | competence type IV pilus assembly protein ComGB | - |
| DQL55_RS06680 (NCTC10350_01379) | comGC | 1396115..1396435 (+) | 321 | WP_039645583.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL55_RS06685 (NCTC10350_01380) | comGD | 1396425..1396856 (+) | 432 | WP_231912771.1 | competence type IV pilus minor pilin ComGD | - |
| DQL55_RS06690 (NCTC10350_01381) | - | 1397049..1397531 (+) | 483 | WP_039645587.1 | competence type IV pilus minor pilin ComGF | - |
| DQL55_RS06695 (NCTC10350_01382) | - | 1397515..1397712 (+) | 198 | WP_039645590.1 | hypothetical protein | - |
| DQL55_RS06700 | - | 1397690..1398220 (+) | 531 | WP_039645592.1 | shikimate kinase | - |
| DQL55_RS06705 (NCTC10350_01384) | gcvT | 1398375..1399466 (+) | 1092 | WP_039645594.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36960.81 Da Isoelectric Point: 7.2049
>NTDB_id=1135661 DQL55_RS06670 WP_039645580.1 1394093..1395067(+) (comGA) [Staphylococcus hyicus strain NCTC10350]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=1135661 DQL55_RS06670 WP_039645580.1 1394093..1395067(+) (comGA) [Staphylococcus hyicus strain NCTC10350]
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAGTTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAGTTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
57.585 |
99.691 |
0.574 |
| comGA | Staphylococcus aureus N315 |
57.585 |
99.691 |
0.574 |