Detailed information NTG1134996

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: XTG_RS15520
• Genome accession: NZ_LR994544
• Coordinates: 3655181..3656434 (+)
• Length: 417 a.a.
• NCBI ID: WP_115677263.1
• Uniprot ID: A0AA46C938
• Organism: Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3655181..3666350	3655181..3656434	within	0

Gene organization within MGE regions

Location: 3655181..3666350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XTG_RS15520 (XTG_003104)	pilC	3655181..3656434 (+)	1254	WP_115677263.1	type II secretion system F family protein	Machinery gene
XTG_RS15525 (XTG_003105)	-	3656441..3657304 (+)	864	WP_115677264.1	A24 family peptidase	-
XTG_RS15530 (XTG_003106)	coaE	3657318..3657926 (+)	609	WP_115677265.1	dephospho-CoA kinase	-
XTG_RS15535 (XTG_003107)	-	3658149..3662711 (+)	4563	WP_181901237.1	RHS repeat-associated core domain-containing protein	-
XTG_RS15540 (XTG_003108)	-	3663347..3663742 (+)	396	WP_115677266.1	SymE family type I addiction module toxin	-
XTG_RS15545 (XTG_003109)	-	3663844..3665178 (-)	1335	WP_164739182.1	HAMP domain-containing sensor histidine kinase	-
XTG_RS15550 (XTG_003110)	-	3665171..3665848 (-)	678	WP_006448355.1	response regulator transcription factor	-
XTG_RS15555 (XTG_003111)	-	3665880..3666350 (-)	471	WP_208414038.1	hypothetical protein	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45477.68 Da
• Isoelectric Point: 10.1195

>NTDB_id=1134996 XTG_RS15520 WP_115677263.1 3655181..3656434(+) (pilC) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
MAAIRGTLKGKPSGTVNQLSTFVWEGADRRGVKMKGEQSARNVNLLRAELRRQGITPSVVKPKPKPLFGEAGKKITPKDI
AFFSRQMATMMKSGVPIVGALEIIGSGHKNPRMRNLVGQVRTDIEGGSSLYESLSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVIAVAIIVSAILLVFVVPQFEDVFKGFGAELPAFTQLIVSASRFMVAYWWLM
LFVSIGCVAGFLYAFKRSLRLQHLVDRLTLRVPIIGQIMHNSAIARFSRTTAVTFKAGVPLVEGLGIVAGATGNAVYEDA
VLRMRDDVSVGYPVNMAMKQVNVFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPLIMVFIGTLVG
GMVIGMYLPIFKLASVV

Nucleotide

• Length: 1254 bp

>NTDB_id=1134996 XTG_RS15520 WP_115677263.1 3655181..3656434(+) (pilC) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
ATGGCAGCAATACGAGGCACTCTTAAAGGTAAGCCTAGCGGCACAGTCAACCAGCTATCTACTTTTGTCTGGGAAGGCGC
AGATCGCCGCGGCGTGAAGATGAAAGGGGAGCAGAGTGCCCGTAACGTGAACTTGTTACGGGCGGAGTTACGACGCCAGG
GCATCACCCCCAGCGTGGTGAAGCCCAAACCAAAGCCACTGTTTGGCGAGGCCGGCAAGAAAATTACGCCAAAGGACATT
GCCTTCTTCAGTCGGCAGATGGCAACAATGATGAAGTCAGGGGTGCCGATCGTTGGTGCGTTGGAAATCATTGGAAGCGG
ACATAAGAACCCACGCATGCGCAACTTGGTTGGACAGGTGAGGACTGACATTGAAGGCGGCTCATCCCTGTACGAATCCT
TGAGTAAGCATCCCGTTCAGTTCGACGAACTCTATAGAAACCTCGTAAAGGCAGGCGAAGGCGCGGGCGTCCTTGAAACT
GTCCTTGATACCGTTGCGACTTATAAAGAGAATATTGAAGCATTGAAGGGGAAGATAAAAAAAGCACTCTTTTATCCAGC
AATGGTCATTGCCGTAGCAATTATCGTCAGCGCAATTCTCTTGGTATTCGTAGTGCCTCAGTTTGAAGATGTATTCAAAG
GCTTTGGTGCCGAACTACCAGCGTTCACTCAGTTGATCGTTTCTGCATCACGCTTCATGGTTGCGTACTGGTGGCTAATG
CTTTTTGTAAGCATTGGTTGCGTAGCGGGGTTTTTGTACGCATTCAAACGCTCATTGCGACTACAGCACCTCGTGGATAG
ACTGACCCTTAGAGTGCCTATCATTGGTCAGATCATGCACAACAGCGCGATTGCGCGCTTTTCAAGAACTACAGCAGTTA
CCTTCAAGGCAGGTGTACCCTTGGTAGAAGGTCTTGGCATAGTCGCCGGGGCGACTGGCAATGCTGTCTATGAAGATGCA
GTCTTACGTATGCGAGACGATGTCTCGGTCGGATATCCGGTCAATATGGCCATGAAACAAGTCAATGTATTCCCACATAT
GGTCATTCAGATGACTGCAATTGGCGAAGAAGCCGGTGCGCTGGACACAATGCTTTTCAAGGTGGCCGAGTATTACGAGC
AAGAAGTGAACAATGCTGTAGATGCACTGAGTAGCCTGCTTGAACCTTTGATTATGGTCTTTATCGGAACTCTAGTCGGC
GGTATGGTCATCGGCATGTATCTACCAATCTTCAAACTTGCTTCGGTGGTCTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	54.5	95.923	0.523
pilC	Pseudomonas stutzeri DSM 10701	54.02	95.444	0.516
pilC	Legionella pneumophila strain ERS1305867	53.634	95.683	0.513
pilC	Acinetobacter baumannii D1279779	52.5	95.923	0.504
pilG	Neisseria gonorrhoeae MS11	44	95.923	0.422
pilG	Neisseria meningitidis 44/76-A	43.5	95.923	0.417
pilC	Vibrio campbellii strain DS40M4	40.943	96.643	0.396
pilC	Vibrio cholerae strain A1552	41.103	95.683	0.393
pilC	Thermus thermophilus HB27	38.155	96.163	0.367