Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | JMV70_RS07570 | Genome accession | NZ_LR884459 |
| Coordinates | 1921323..1922543 (+) | Length | 406 a.a. |
| NCBI ID | WP_201498217.1 | Uniprot ID | - |
| Organism | Psychrobacter arenosus isolate Psychrobacter arenosus R7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1916323..1927543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV70_RS07555 | secG | 1917502..1917810 (-) | 309 | WP_201498214.1 | preprotein translocase subunit SecG | - |
| JMV70_RS07560 | tpiA | 1918008..1918802 (-) | 795 | WP_201498215.1 | triose-phosphate isomerase | - |
| JMV70_RS07565 | pilB | 1919433..1921142 (+) | 1710 | WP_201498216.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JMV70_RS07570 | pilC | 1921323..1922543 (+) | 1221 | WP_201498217.1 | type II secretion system F family protein | Machinery gene |
| JMV70_RS07575 | pilD | 1922562..1923455 (+) | 894 | WP_201498218.1 | A24 family peptidase | Machinery gene |
| JMV70_RS07580 | coaE | 1923689..1924303 (+) | 615 | WP_406947292.1 | dephospho-CoA kinase | - |
| JMV70_RS07585 | rlmB | 1924474..1925226 (-) | 753 | WP_201498220.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| JMV70_RS07590 | - | 1925495..1925830 (-) | 336 | WP_201498221.1 | pyrimidine/purine nucleoside phosphorylase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44803.60 Da Isoelectric Point: 9.2566
>NTDB_id=1133179 JMV70_RS07570 WP_201498217.1 1921323..1922543(+) (pilC) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
MAKATTDMLLDFVYDGTNRRGQQVKGETTSRSMELAKATLRKQGITVKTIKKKPKPLFTFKKKIKPIDIAIFSRQLATML
KAGVPLTQSFEIVADSLDNPSMKDLVLALKGEVESGTTFTTALRRHPRYFDELFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAVKYPIAVIIVAFIVTVILLVKVVPVFADMFGSFGAELPAFTQMVVGMSEWMQKWWYIMLIAVGLAIYGF
SEAKARSADFRDFLDRTTLRLPIFGNIAYQAVIARFSRTLSTTFAAGVPLIDALNSTAGATNNVVFYNATQQIKDDVSTG
QQMNFAMRSTNLFPSMAIQMVAIGEEAGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLIGGLVIAMYLPIF
QMGSVI
MAKATTDMLLDFVYDGTNRRGQQVKGETTSRSMELAKATLRKQGITVKTIKKKPKPLFTFKKKIKPIDIAIFSRQLATML
KAGVPLTQSFEIVADSLDNPSMKDLVLALKGEVESGTTFTTALRRHPRYFDELFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAVKYPIAVIIVAFIVTVILLVKVVPVFADMFGSFGAELPAFTQMVVGMSEWMQKWWYIMLIAVGLAIYGF
SEAKARSADFRDFLDRTTLRLPIFGNIAYQAVIARFSRTLSTTFAAGVPLIDALNSTAGATNNVVFYNATQQIKDDVSTG
QQMNFAMRSTNLFPSMAIQMVAIGEEAGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLIGGLVIAMYLPIF
QMGSVI
Nucleotide
Download Length: 1221 bp
>NTDB_id=1133179 JMV70_RS07570 WP_201498217.1 1921323..1922543(+) (pilC) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
ATGGCTAAAGCCACTACTGATATGCTATTAGACTTCGTTTATGATGGTACCAATCGCCGTGGGCAGCAGGTTAAAGGCGA
AACGACCAGCCGCAGTATGGAGCTGGCCAAAGCCACCCTACGCAAACAAGGCATTACGGTTAAAACTATTAAAAAGAAAC
CGAAGCCTTTATTTACGTTTAAGAAAAAAATTAAACCTATTGATATTGCTATCTTTTCACGCCAGTTGGCCACTATGCTA
AAGGCAGGTGTACCCCTTACTCAGTCTTTCGAAATTGTAGCGGACTCTCTAGATAATCCCTCTATGAAAGACTTGGTTTT
GGCTTTAAAAGGGGAAGTTGAATCAGGTACAACTTTCACGACCGCCTTACGCAGACATCCACGCTATTTTGATGAGCTAT
TTTGTTCACTGGTTGAATCTGGCGAACAGTCGGGTGCGTTAGAAACTATGCTAGAGCGGGTAGCGACCTATAAAGAAAAA
AGCGAGCTGCTCAAAGCTAAAATTAAAAAAGCAGTAAAGTATCCCATAGCGGTTATTATCGTGGCTTTTATCGTCACTGT
GATTCTATTGGTCAAAGTGGTACCGGTATTTGCTGATATGTTTGGCTCGTTTGGCGCTGAACTGCCCGCCTTTACGCAGA
TGGTTGTAGGCATGTCTGAATGGATGCAGAAATGGTGGTACATTATGCTAATAGCAGTTGGGTTAGCTATCTATGGCTTT
AGTGAAGCCAAAGCCCGCAGTGCTGATTTCCGAGATTTTTTGGACCGTACGACTTTACGTCTACCTATCTTTGGTAATAT
TGCTTATCAAGCCGTTATCGCGCGTTTTTCGCGGACGCTATCAACCACTTTTGCTGCAGGCGTGCCCTTGATTGATGCTT
TAAATTCTACAGCCGGCGCTACGAATAACGTGGTGTTCTATAACGCGACTCAACAAATTAAAGATGACGTCTCTACCGGT
CAGCAGATGAACTTTGCTATGCGTTCGACCAATCTGTTTCCTAGTATGGCGATTCAGATGGTTGCAATTGGTGAAGAGGC
CGGTAGCTTAGAAGAGATGTTGGATAAAGTCGCAGTTTACTACGAAAACGAAGTTGATAATGCGGTTGATGGTTTGACCA
GCTTAATGGAGCCGATGATTATGGCGGTGTTAGGGGTCTTAATCGGTGGCCTAGTTATCGCTATGTATTTGCCAATCTTC
CAAATGGGCTCAGTAATTTAG
ATGGCTAAAGCCACTACTGATATGCTATTAGACTTCGTTTATGATGGTACCAATCGCCGTGGGCAGCAGGTTAAAGGCGA
AACGACCAGCCGCAGTATGGAGCTGGCCAAAGCCACCCTACGCAAACAAGGCATTACGGTTAAAACTATTAAAAAGAAAC
CGAAGCCTTTATTTACGTTTAAGAAAAAAATTAAACCTATTGATATTGCTATCTTTTCACGCCAGTTGGCCACTATGCTA
AAGGCAGGTGTACCCCTTACTCAGTCTTTCGAAATTGTAGCGGACTCTCTAGATAATCCCTCTATGAAAGACTTGGTTTT
GGCTTTAAAAGGGGAAGTTGAATCAGGTACAACTTTCACGACCGCCTTACGCAGACATCCACGCTATTTTGATGAGCTAT
TTTGTTCACTGGTTGAATCTGGCGAACAGTCGGGTGCGTTAGAAACTATGCTAGAGCGGGTAGCGACCTATAAAGAAAAA
AGCGAGCTGCTCAAAGCTAAAATTAAAAAAGCAGTAAAGTATCCCATAGCGGTTATTATCGTGGCTTTTATCGTCACTGT
GATTCTATTGGTCAAAGTGGTACCGGTATTTGCTGATATGTTTGGCTCGTTTGGCGCTGAACTGCCCGCCTTTACGCAGA
TGGTTGTAGGCATGTCTGAATGGATGCAGAAATGGTGGTACATTATGCTAATAGCAGTTGGGTTAGCTATCTATGGCTTT
AGTGAAGCCAAAGCCCGCAGTGCTGATTTCCGAGATTTTTTGGACCGTACGACTTTACGTCTACCTATCTTTGGTAATAT
TGCTTATCAAGCCGTTATCGCGCGTTTTTCGCGGACGCTATCAACCACTTTTGCTGCAGGCGTGCCCTTGATTGATGCTT
TAAATTCTACAGCCGGCGCTACGAATAACGTGGTGTTCTATAACGCGACTCAACAAATTAAAGATGACGTCTCTACCGGT
CAGCAGATGAACTTTGCTATGCGTTCGACCAATCTGTTTCCTAGTATGGCGATTCAGATGGTTGCAATTGGTGAAGAGGC
CGGTAGCTTAGAAGAGATGTTGGATAAAGTCGCAGTTTACTACGAAAACGAAGTTGATAATGCGGTTGATGGTTTGACCA
GCTTAATGGAGCCGATGATTATGGCGGTGTTAGGGGTCTTAATCGGTGGCCTAGTTATCGCTATGTATTTGCCAATCTTC
CAAATGGGCTCAGTAATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
68.137 |
100 |
0.685 |
| pilC | Acinetobacter baumannii D1279779 |
68.137 |
100 |
0.685 |
| pilC | Pseudomonas stutzeri DSM 10701 |
63.291 |
97.291 |
0.616 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.89 |
98.276 |
0.549 |
| pilG | Neisseria gonorrhoeae MS11 |
44.949 |
97.537 |
0.438 |
| pilG | Neisseria meningitidis 44/76-A |
44.697 |
97.537 |
0.436 |
| pilC | Vibrio cholerae strain A1552 |
43.596 |
100 |
0.436 |
| pilC | Vibrio campbellii strain DS40M4 |
42.118 |
100 |
0.421 |