Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JMV70_RS07575 Genome accession   NZ_LR884459
Coordinates   1922562..1923455 (+) Length   297 a.a.
NCBI ID   WP_201498218.1    Uniprot ID   -
Organism   Psychrobacter arenosus isolate Psychrobacter arenosus R7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1917562..1928455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV70_RS07560 tpiA 1918008..1918802 (-) 795 WP_201498215.1 triose-phosphate isomerase -
  JMV70_RS07565 pilB 1919433..1921142 (+) 1710 WP_201498216.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JMV70_RS07570 pilC 1921323..1922543 (+) 1221 WP_201498217.1 type II secretion system F family protein Machinery gene
  JMV70_RS07575 pilD 1922562..1923455 (+) 894 WP_201498218.1 A24 family peptidase Machinery gene
  JMV70_RS07580 coaE 1923689..1924303 (+) 615 WP_406947292.1 dephospho-CoA kinase -
  JMV70_RS07585 rlmB 1924474..1925226 (-) 753 WP_201498220.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JMV70_RS07590 - 1925495..1925830 (-) 336 WP_201498221.1 pyrimidine/purine nucleoside phosphorylase -
  JMV70_RS07595 recN 1926485..1928161 (+) 1677 WP_201498222.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32894.59 Da        Isoelectric Point: 8.4675

>NTDB_id=1133180 JMV70_RS07575 WP_201498218.1 1922562..1923455(+) (pilD) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
MLQLLQENFGLALLAFGILGLCVGSFLNVVIHRMPLMMMREWRRDCSQILSEQADISVELMTPVNQIVAKDTPLTLSLPR
SRCPSCDHQIKWYENIPLISWLMLRGKCSSCQQAISSRYPFVEVVTALLSVLVIYKFGVSMQGLAALILVWTLVALTGID
FDTQFLPDRLTFPLAGLGLAVNAYGLFISPTAAIWGLLIGFFSLWIVVKIFYLITKKHGMGAGDFKLLAVLGAWLGPMML
PLIILLSSLLGSIIGLILMRKHGESKPFAFGPYIAIAGIIALLYGSEIMTWYLNMYG

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1133180 JMV70_RS07575 WP_201498218.1 1922562..1923455(+) (pilD) [Psychrobacter arenosus isolate Psychrobacter arenosus R7]
ATGTTGCAGCTTTTACAAGAAAATTTTGGGTTGGCCTTATTGGCATTTGGCATCCTCGGCCTGTGTGTGGGCAGTTTCTT
AAACGTGGTTATTCATCGCATGCCTCTAATGATGATGCGTGAATGGCGACGCGACTGTAGCCAGATATTGAGCGAACAGG
CGGATATTTCGGTAGAACTGATGACGCCAGTCAATCAGATTGTCGCTAAAGATACGCCTTTGACCCTAAGCCTGCCGCGC
TCACGCTGTCCAAGCTGTGATCATCAGATTAAATGGTATGAAAACATCCCACTAATCAGCTGGCTTATGCTCAGAGGCAA
ATGCTCAAGCTGCCAACAAGCGATTAGCTCTCGCTATCCTTTTGTAGAAGTCGTTACGGCGCTATTGTCCGTATTGGTTA
TCTATAAATTTGGCGTAAGTATGCAAGGCTTGGCCGCGCTAATACTGGTTTGGACCCTAGTGGCTTTAACCGGCATCGAT
TTTGATACTCAGTTTTTACCAGACCGTCTTACCTTTCCTTTAGCCGGTCTCGGGCTAGCCGTGAATGCTTATGGTTTATT
CATCTCTCCTACTGCTGCGATTTGGGGCTTGTTGATTGGCTTTTTCTCGCTTTGGATTGTGGTCAAAATATTTTATTTAA
TCACTAAAAAACACGGCATGGGCGCTGGAGACTTTAAACTATTGGCGGTTCTGGGCGCTTGGCTTGGCCCTATGATGCTG
CCCTTGATTATCTTATTGTCGTCTTTGTTAGGCTCTATCATCGGGCTGATTCTTATGCGCAAACATGGCGAGAGCAAGCC
TTTTGCCTTTGGGCCCTATATTGCTATAGCCGGGATAATAGCTTTGCTATATGGCAGTGAAATTATGACCTGGTATTTAA
ATATGTATGGCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-137)

Type IV leader peptidase family (Peptidase_A24)

(147-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

54.355

96.633

0.525
  pilD Acinetobacter baumannii D1279779

53.659

96.633

0.519
  pilD Vibrio campbellii strain DS40M4

48.227

94.949

0.458
  pilD Vibrio cholerae strain A1552

47.518

94.949

0.451
  pilD Neisseria gonorrhoeae MS11

42.756

95.286

0.407

Multiple sequence alignment