Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   H5027_RS06380 Genome accession   NZ_LR861807
Coordinates   1539403..1540533 (+) Length   376 a.a.
NCBI ID   WP_016902355.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. juglandis isolate 3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534403..1545533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5027_RS06355 (XSP_001271) - 1534541..1535161 (-) 621 WP_064506526.1 M23 family metallopeptidase -
  H5027_RS06360 (XSP_001272) - 1535297..1535722 (-) 426 WP_026064288.1 HU family DNA-binding protein -
  H5027_RS06365 (XSP_001273) proC 1536321..1537166 (-) 846 WP_039813263.1 pyrroline-5-carboxylate reductase -
  H5027_RS06370 (XSP_001274) - 1537228..1537920 (-) 693 WP_039813260.1 YggS family pyridoxal phosphate-dependent enzyme -
  H5027_RS06375 (XSP_001275) pilT 1538243..1539280 (+) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  H5027_RS06380 (XSP_001276) pilU 1539403..1540533 (+) 1131 WP_016902355.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  H5027_RS06385 (XSP_001277) - 1540819..1541493 (+) 675 WP_024940756.1 YitT family protein -
  H5027_RS06390 (XSP_001278) - 1541631..1542176 (-) 546 WP_039813256.1 DNA-3-methyladenine glycosylase I -
  H5027_RS06395 (XSP_001279) - 1542512..1543078 (+) 567 WP_011051924.1 YqgE/AlgH family protein -
  H5027_RS06400 (XSP_001280) ruvX 1543071..1543538 (+) 468 WP_039513833.1 Holliday junction resolvase RuvX -
  H5027_RS06405 (XSP_001281) - 1543554..1544501 (+) 948 WP_053054349.1 aspartate carbamoyltransferase catalytic subunit -
  H5027_RS06410 (XSP_001282) - 1544719..1545159 (+) 441 WP_053054348.1 OsmC family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41966.24 Da        Isoelectric Point: 6.8287

>NTDB_id=1132477 H5027_RS06380 WP_016902355.1 1539403..1540533(+) (pilU) [Xanthomonas arboricola pv. juglandis isolate 3]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLAQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1132477 H5027_RS06380 WP_016902355.1 1539403..1540533(+) (pilU) [Xanthomonas arboricola pv. juglandis isolate 3]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCGGGGAT
GCCGCCGGCGATCAAGGTGCACGGCAAGATCAGTCCGATCACCCAGACTCCGCTGACCGCGCAACAGAGCCGCGATCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAATTCGAAAAGACCCACGAGTGCAATTTCGCCATCGGCGTGTCCGGG
GTCGGGCGCTTTCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGGATCGAAACGCGTATCCC
CACGGTGGAAGAGTTGAGCCTTCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGCACCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGTTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAAGTCGGCATCGATACTGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGGCAGGCGCCGGACGTGATCATGATTGGCGAGGTGCGCACCCGCGAAGGCA
TGGATCATGCCGTGGCCTTCGCCGAAACCGGCCATCTGGTGCTGTGCACCCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGACCGCCGCAACCAGTTGCTGATGGATCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAGTTGATTCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTGGGCACACCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTGTACCAGGCCGGCGAGATCAGCTACGAAGACGCGCTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTGTCGCAGGGCGGCGACGCCAAGACGCTGGCGCAGGGCCTGGATGGCGTGGAGATCGCCG
AGGTTCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.575

97.606

0.66
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.297

94.947

0.402
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367

Multiple sequence alignment