Detailed information
Bioinformatically predicted
Overview
| Name | comR | Type | Regulator |
| Locus tag | H1W80_RS01440 | Genome accession | NZ_LR822040 |
| Coordinates | 263621..264520 (+) | Length | 299 a.a. |
| NCBI ID | WP_002946143.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus isolate STH_CIRM_1125 | ||
| Function | activate transcription of comX; activate transcription of comS (predicted from homology) Competence regulation |
||
Genomic Context
Location: 258621..269520
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1W80_RS01420 (STHERMO_0287) | trkA | 259759..261108 (-) | 1350 | WP_011225444.1 | Trk system potassium transporter TrkA | - |
| H1W80_RS01425 (STHERMO_0288) | - | 261366..261905 (+) | 540 | WP_372585740.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| H1W80_RS01430 (STHERMO_0289) | - | 262216..262773 (+) | 558 | WP_024704183.1 | ECF transporter S component | - |
| H1W80_RS01435 (STHERMO_0290) | - | 262776..263426 (+) | 651 | WP_022096567.1 | phosphatase PAP2 family protein | - |
| H1W80_RS01440 (STHERMO_0292) | comR | 263621..264520 (+) | 900 | WP_002946143.1 | helix-turn-helix domain-containing protein | Regulator |
| H1W80_RS09320 | - | 264758..265081 (+) | 324 | Protein_234 | cysteine peptidase family C39 domain-containing protein | - |
| H1W80_RS09785 (STHERMO_0295) | comA | 265227..265670 (+) | 444 | WP_260232029.1 | ABC transporter transmembrane domain-containing protein | Regulator |
| H1W80_RS09790 (STHERMO_0296) | comA | 265648..265938 (+) | 291 | WP_180473397.1 | ABC transporter transmembrane domain-containing protein | Regulator |
| H1W80_RS09330 (STHERMO_0297) | comA | 265960..266169 (+) | 210 | WP_232086550.1 | peptidase | Regulator |
| H1W80_RS01465 (STHERMO_0299) | - | 266224..266792 (+) | 569 | Protein_238 | ATP-binding cassette domain-containing protein | - |
| H1W80_RS01470 (STHERMO_0300) | - | 266900..267211 (+) | 312 | WP_022096570.1 | DUF805 domain-containing protein | - |
| H1W80_RS01475 (STHERMO_0303) | - | 267638..268534 (-) | 897 | WP_232086552.1 | urease cluster protein | - |
| H1W80_RS01480 (STHERMO_0304) | - | 268939..269454 (+) | 516 | WP_002949547.1 | AmiS/UreI family transporter | - |
Sequence
Protein
Download Length: 299 a.a. Molecular weight: 35303.77 Da Isoelectric Point: 5.1073
>NTDB_id=1131983 H1W80_RS01440 WP_002946143.1 263621..264520(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_1125]
MNLKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
MNLKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
Nucleotide
Download Length: 900 bp
>NTDB_id=1131983 H1W80_RS01440 WP_002946143.1 263621..264520(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_1125]
TTGAACTTAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
TTGAACTTAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comR | Streptococcus thermophilus LMG 18311 |
99.666 |
100 |
0.997 |
| comR | Streptococcus thermophilus LMD-9 |
99.666 |
100 |
0.997 |
| comR | Streptococcus salivarius strain HSISS4 |
94.983 |
100 |
0.95 |
| comR | Streptococcus salivarius SK126 |
94.314 |
100 |
0.943 |
| comR/comR2 | Streptococcus sobrinus strain NIDR 6715-7 |
42.14 |
100 |
0.421 |
| comR/comR1 | Streptococcus sobrinus strain NIDR 6715-7 |
41.806 |
100 |
0.418 |