Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H1W80_RS09790 Genome accession   NZ_LR822040
Coordinates   265648..265938 (+) Length   96 a.a.
NCBI ID   WP_180473397.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1125     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 260648..270938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W80_RS01425 (STHERMO_0288) - 261366..261905 (+) 540 WP_372585740.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  H1W80_RS01430 (STHERMO_0289) - 262216..262773 (+) 558 WP_024704183.1 ECF transporter S component -
  H1W80_RS01435 (STHERMO_0290) - 262776..263426 (+) 651 WP_022096567.1 phosphatase PAP2 family protein -
  H1W80_RS01440 (STHERMO_0292) comR 263621..264520 (+) 900 WP_002946143.1 helix-turn-helix domain-containing protein Regulator
  H1W80_RS09320 - 264758..265081 (+) 324 Protein_234 cysteine peptidase family C39 domain-containing protein -
  H1W80_RS09785 (STHERMO_0295) comA 265227..265670 (+) 444 WP_260232029.1 ABC transporter transmembrane domain-containing protein Regulator
  H1W80_RS09790 (STHERMO_0296) comA 265648..265938 (+) 291 WP_180473397.1 ABC transporter transmembrane domain-containing protein Regulator
  H1W80_RS09330 (STHERMO_0297) comA 265960..266169 (+) 210 WP_232086550.1 peptidase Regulator
  H1W80_RS01465 (STHERMO_0299) - 266224..266792 (+) 569 Protein_238 ATP-binding cassette domain-containing protein -
  H1W80_RS01470 (STHERMO_0300) - 266900..267211 (+) 312 WP_022096570.1 DUF805 domain-containing protein -
  H1W80_RS01475 (STHERMO_0303) - 267638..268534 (-) 897 WP_232086552.1 urease cluster protein -
  H1W80_RS01480 (STHERMO_0304) - 268939..269454 (+) 516 WP_002949547.1 AmiS/UreI family transporter -
  H1W80_RS01485 (STHERMO_0305) - 269479..269781 (+) 303 WP_002886558.1 urease subunit gamma -
  H1W80_RS01490 (STHERMO_0306) - 269793..270104 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11358.22 Da        Isoelectric Point: 7.0106

>NTDB_id=1132032 H1W80_RS09790 WP_180473397.1 265648..265938(+) (comA) [Streptococcus thermophilus isolate STH_CIRM_1125]
MIILAFYKLFENENYQLMEANSQVNTAIIDDLRGIETLKSLRVKERRYQEIEVKFHDYLKKSLSEAKWKLTQDGLKTEVP
LVSNVFILWYGAQLVM

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1132032 H1W80_RS09790 WP_180473397.1 265648..265938(+) (comA) [Streptococcus thermophilus isolate STH_CIRM_1125]
TTGATTATTCTGGCCTTTTATAAGCTTTTTGAGAATGAAAATTATCAATTAATGGAGGCAAATAGTCAGGTCAATACTGC
TATTATTGATGATTTACGTGGTATTGAAACTTTAAAATCTTTAAGAGTTAAAGAGAGACGTTACCAAGAAATTGAGGTGA
AATTCCATGACTACTTGAAGAAATCTTTGTCTGAGGCCAAGTGGAAATTAACTCAGGATGGCTTAAAAACAGAGGTTCCG
TTAGTTTCCAATGTCTTTATCTTATGGTATGGGGCACAATTGGTTATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae R6

48.958

100

0.49
  comA Streptococcus pneumoniae Rx1

48.958

100

0.49
  comA Streptococcus pneumoniae D39

48.958

100

0.49
  comA Streptococcus pneumoniae TIGR4

48.958

100

0.49
  comA Streptococcus mitis SK321

48.958

100

0.49
  comA Streptococcus mitis NCTC 12261

48.958

100

0.49
  comA Streptococcus gordonii str. Challis substr. CH1

47.917

100

0.479
  comA/nlmT Streptococcus mutans UA159

46.875

100

0.469

Multiple sequence alignment