Detailed information NTG1131489

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H1W95_RS08845
• Genome accession: NZ_LR822030
• Coordinates: 1721427..1721855 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1046
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1716427..1726855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W95_RS08805 (STHERMO_1994)	-	1716564..1717007 (-)	444	WP_041829335.1	hypothetical protein	-
H1W95_RS10365 (STHERMO_1995)	-	1717081..1717419 (-)	339	WP_228024408.1	CPBP family intramembrane glutamic endopeptidase	-
H1W95_RS10370 (STHERMO_1996)	-	1717463..1717738 (-)	276	WP_084830830.1	CAAX protease	-
H1W95_RS08815 (STHERMO_1997)	-	1717750..1717947 (-)	198	WP_084826167.1	helix-turn-helix transcriptional regulator	-
H1W95_RS08820 (STHERMO_1998)	-	1718196..1719389 (-)	1194	WP_084826168.1	acetate kinase	-
H1W95_RS08825 (STHERMO_1999)	comYH	1719445..1720401 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1W95_RS08830 (STHERMO_2000)	comGG	1720446..1720763 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
H1W95_RS08835 (STHERMO_2001)	comYF	1720741..1721178 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W95_RS08840 (STHERMO_2002)	comGE	1721162..1721455 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W95_RS08845 (STHERMO_2003)	comYD	1721427..1721855 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W95_RS08850 (STHERMO_2004)	comYC	1721815..1722141 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W95_RS08855 (STHERMO_2005)	comYB	1722138..1723238 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W95_RS08860 (STHERMO_2006)	comGA/cglA/cilD	1723120..1724061 (-)	942	WP_180483385.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W95_RS08865 (STHERMO_2007)	-	1724142..1724504 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1131489 H1W95_RS08845 WP_011226626.1 1721427..1721855(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1046]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1131489 H1W95_RS08845 WP_011226626.1 1721427..1721855(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCGAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38