Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W95_RS08825 Genome accession   NZ_LR822030
Coordinates   1719445..1720401 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_1046     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1714445..1725401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W95_RS08795 (STHERMO_1992) proC 1715005..1715775 (+) 771 WP_082309149.1 pyrroline-5-carboxylate reductase -
  H1W95_RS08800 (STHERMO_1993) - 1715805..1716467 (-) 663 WP_084826165.1 type II CAAX endopeptidase family protein -
  H1W95_RS08805 (STHERMO_1994) - 1716564..1717007 (-) 444 WP_041829335.1 hypothetical protein -
  H1W95_RS10365 (STHERMO_1995) - 1717081..1717419 (-) 339 WP_228024408.1 CPBP family intramembrane glutamic endopeptidase -
  H1W95_RS10370 (STHERMO_1996) - 1717463..1717738 (-) 276 WP_084830830.1 CAAX protease -
  H1W95_RS08815 (STHERMO_1997) - 1717750..1717947 (-) 198 WP_084826167.1 helix-turn-helix transcriptional regulator -
  H1W95_RS08820 (STHERMO_1998) - 1718196..1719389 (-) 1194 WP_084826168.1 acetate kinase -
  H1W95_RS08825 (STHERMO_1999) comYH 1719445..1720401 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W95_RS08830 (STHERMO_2000) comGG 1720446..1720763 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  H1W95_RS08835 (STHERMO_2001) comYF 1720741..1721178 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W95_RS08840 (STHERMO_2002) comGE 1721162..1721455 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W95_RS08845 (STHERMO_2003) comYD 1721427..1721855 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W95_RS08850 (STHERMO_2004) comYC 1721815..1722141 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W95_RS08855 (STHERMO_2005) comYB 1722138..1723238 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W95_RS08860 (STHERMO_2006) comGA/cglA/cilD 1723120..1724061 (-) 942 WP_180483385.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W95_RS08865 (STHERMO_2007) - 1724142..1724504 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1131487 H1W95_RS08825 WP_011226622.1 1719445..1720401(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1046]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131487 H1W95_RS08825 WP_011226622.1 1719445..1720401(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1046]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment