Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H0510_RS09800 Genome accession   NZ_LR822019
Coordinates   269048..269338 (+) Length   96 a.a.
NCBI ID   WP_179966908.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 264048..274338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS01455 (STHERMO_0292) - 264766..265305 (+) 540 WP_372585740.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  H0510_RS01460 (STHERMO_0293) - 265617..266174 (+) 558 WP_002949523.1 ECF transporter S component -
  H0510_RS01465 (STHERMO_0294) - 266177..266827 (+) 651 WP_011225447.1 phosphatase PAP2 family protein -
  H0510_RS01470 (STHERMO_0295) comR 267022..267921 (+) 900 WP_002946143.1 helix-turn-helix domain-containing protein Regulator
  H0510_RS09790 - 268096..268503 (+) 408 Protein_239 cysteine peptidase family C39 domain-containing protein -
  H0510_RS09795 comA 268606..269070 (+) 465 WP_260215160.1 ABC transporter transmembrane domain-containing protein Regulator
  H0510_RS09800 (STHERMO_0298) comA 269048..269338 (+) 291 WP_179966908.1 ABC transporter transmembrane domain-containing protein Regulator
  H0510_RS09355 (STHERMO_0299) comA 269360..269569 (+) 210 WP_002946147.1 hypothetical protein Regulator
  H0510_RS01490 (STHERMO_0301) - 269624..270192 (+) 569 Protein_243 ATP-binding cassette domain-containing protein -
  H0510_RS01495 (STHERMO_0302) - 270300..270611 (+) 312 WP_011226857.1 DUF805 domain-containing protein -
  H0510_RS09365 - 270832..271179 (-) 348 WP_232086705.1 DUF4153 domain-containing protein -
  H0510_RS09370 (STHERMO_0305) - 271104..272000 (-) 897 WP_232086673.1 urease cluster protein -
  H0510_RS01505 (STHERMO_0306) - 272405..272920 (+) 516 WP_002949547.1 AmiS/UreI family transporter -
  H0510_RS01510 (STHERMO_0307) - 272945..273247 (+) 303 WP_002886558.1 urease subunit gamma -
  H0510_RS01515 (STHERMO_0308) - 273259..273570 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11491.46 Da        Isoelectric Point: 8.3772

>NTDB_id=1131058 H0510_RS09800 WP_179966908.1 269048..269338(+) (comA) [Streptococcus thermophilus isolate STH_CIRM_772]
MIILAFYKLFEKENYQLMEANSQVNTAIIDDLRGIETLKSLRVKERRYQEIEVKFHDYLKKSLSEVKWKLTQDGLKTEVQ
LVFNVFILWYGAQLVM

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1131058 H0510_RS09800 WP_179966908.1 269048..269338(+) (comA) [Streptococcus thermophilus isolate STH_CIRM_772]
TTGATTATTCTGGCCTTTTATAAGCTTTTTGAGAAGGAAAATTATCAATTAATGGAGGCAAATAGTCAGGTCAATACTGC
TATTATTGATGATTTACGTGGTATTGAAACTTTAAAATCTTTAAGAGTTAAAGAGAGACGTTACCAAGAAATTGAGGTGA
AATTCCATGACTACTTGAAGAAATCTTTGTCTGAGGTCAAGTGGAAATTAACTCAGGATGGCTTAAAAACAGAGGTTCAG
TTAGTTTTCAATGTCTTTATCTTATGGTATGGGGCACAATTGGTTATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae R6

50

100

0.5
  comA Streptococcus pneumoniae Rx1

50

100

0.5
  comA Streptococcus pneumoniae D39

50

100

0.5
  comA Streptococcus mitis NCTC 12261

50

100

0.5
  comA Streptococcus pneumoniae TIGR4

50

100

0.5
  comA Streptococcus mitis SK321

50

100

0.5
  comA Streptococcus gordonii str. Challis substr. CH1

48.958

100

0.49
  comA/nlmT Streptococcus mutans UA159

47.917

100

0.479

Multiple sequence alignment