Detailed information
Bioinformatically predicted
Overview
| Name | comR | Type | Regulator |
| Locus tag | H0510_RS01470 | Genome accession | NZ_LR822019 |
| Coordinates | 267022..267921 (+) | Length | 299 a.a. |
| NCBI ID | WP_002946143.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus isolate STH_CIRM_772 | ||
| Function | activate transcription of comX; activate transcription of comS (predicted from homology) Competence regulation |
||
Genomic Context
Location: 262022..272921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H0510_RS01450 (STHERMO_0291) | trkA | 263158..264507 (-) | 1350 | WP_011225444.1 | Trk system potassium transporter TrkA | - |
| H0510_RS01455 (STHERMO_0292) | - | 264766..265305 (+) | 540 | WP_372585740.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| H0510_RS01460 (STHERMO_0293) | - | 265617..266174 (+) | 558 | WP_002949523.1 | ECF transporter S component | - |
| H0510_RS01465 (STHERMO_0294) | - | 266177..266827 (+) | 651 | WP_011225447.1 | phosphatase PAP2 family protein | - |
| H0510_RS01470 (STHERMO_0295) | comR | 267022..267921 (+) | 900 | WP_002946143.1 | helix-turn-helix domain-containing protein | Regulator |
| H0510_RS09790 | - | 268096..268503 (+) | 408 | Protein_239 | cysteine peptidase family C39 domain-containing protein | - |
| H0510_RS09795 | comA | 268606..269070 (+) | 465 | WP_260215160.1 | ABC transporter transmembrane domain-containing protein | Regulator |
| H0510_RS09800 (STHERMO_0298) | comA | 269048..269338 (+) | 291 | WP_179966908.1 | ABC transporter transmembrane domain-containing protein | Regulator |
| H0510_RS09355 (STHERMO_0299) | comA | 269360..269569 (+) | 210 | WP_002946147.1 | hypothetical protein | Regulator |
| H0510_RS01490 (STHERMO_0301) | - | 269624..270192 (+) | 569 | Protein_243 | ATP-binding cassette domain-containing protein | - |
| H0510_RS01495 (STHERMO_0302) | - | 270300..270611 (+) | 312 | WP_011226857.1 | DUF805 domain-containing protein | - |
| H0510_RS09365 | - | 270832..271179 (-) | 348 | WP_232086705.1 | DUF4153 domain-containing protein | - |
| H0510_RS09370 (STHERMO_0305) | - | 271104..272000 (-) | 897 | WP_232086673.1 | urease cluster protein | - |
| H0510_RS01505 (STHERMO_0306) | - | 272405..272920 (+) | 516 | WP_002949547.1 | AmiS/UreI family transporter | - |
Sequence
Protein
Download Length: 299 a.a. Molecular weight: 35303.77 Da Isoelectric Point: 5.1073
>NTDB_id=1131011 H0510_RS01470 WP_002946143.1 267022..267921(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_772]
MNLKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
MNLKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
Nucleotide
Download Length: 900 bp
>NTDB_id=1131011 H0510_RS01470 WP_002946143.1 267022..267921(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_772]
TTGAACTTAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
TTGAACTTAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comR | Streptococcus thermophilus LMG 18311 |
99.666 |
100 |
0.997 |
| comR | Streptococcus thermophilus LMD-9 |
99.666 |
100 |
0.997 |
| comR | Streptococcus salivarius strain HSISS4 |
94.983 |
100 |
0.95 |
| comR | Streptococcus salivarius SK126 |
94.314 |
100 |
0.943 |
| comR/comR2 | Streptococcus sobrinus strain NIDR 6715-7 |
42.14 |
100 |
0.421 |
| comR/comR1 | Streptococcus sobrinus strain NIDR 6715-7 |
41.806 |
100 |
0.418 |