Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   L1Z78_RS26595 Genome accession   NZ_LR813084
Coordinates   5835005..5835529 (+) Length   174 a.a.
NCBI ID   WP_234639322.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5830005..5840529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS26575 (TML_05280) sucD 5831016..5831909 (+) 894 WP_234639318.1 succinate--CoA ligase subunit alpha -
  L1Z78_RS26580 (TML_05281) - 5832077..5832769 (+) 693 WP_234639319.1 TerC family protein -
  L1Z78_RS26585 (TML_05282) - 5833050..5833832 (+) 783 WP_234639320.1 PP2C family protein-serine/threonine phosphatase -
  L1Z78_RS26590 (TML_05283) - 5834077..5834790 (+) 714 WP_234639321.1 FHA domain-containing protein -
  L1Z78_RS26595 (TML_05284) pilE 5835005..5835529 (+) 525 WP_234639322.1 pilin Machinery gene
  L1Z78_RS26600 - 5835580..5837403 (+) 1824 WP_234639323.1 tetratricopeptide repeat protein -
  L1Z78_RS26605 (TML_05286) - 5837697..5838452 (-) 756 WP_234639324.1 SDR family NAD(P)-dependent oxidoreductase -
  L1Z78_RS26610 (TML_05287) - 5838454..5839761 (-) 1308 WP_234639325.1 FAD-binding oxidoreductase -
  L1Z78_RS26615 (TML_05288) - 5839758..5840171 (-) 414 WP_234639326.1 GtrA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 17939.50 Da        Isoelectric Point: 9.0311

>NTDB_id=1130397 L1Z78_RS26595 WP_234639322.1 5835005..5835529(+) (pilE) [Delftia tsuruhatensis isolate BB1455]
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRSKVSEAVIQATSPKSLISEAFQTDGFSGMQAAAATFNAKPTN
EKATKYVADMTVDSATGQITVTLQSGTSAGFPTDVRGKTLIFTPNVQKVALADGKQGAIDWACGSTTATTAGTRGLGAAG
TGTLPAKYAPAECR

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1130397 L1Z78_RS26595 WP_234639322.1 5835005..5835529(+) (pilE) [Delftia tsuruhatensis isolate BB1455]
ATGAAGCGTTCCATCCAGCAAGGTTTCACCTTGATCGAACTGATGATCGTCGTGGCGATCATCGGCATTTTGGCAGCCGT
GGCGCTGCCGGCTTACCAGGATTACACGGTGCGTTCCAAGGTCAGCGAGGCCGTGATCCAAGCCACTTCGCCCAAGTCGC
TGATCAGTGAAGCCTTCCAGACTGACGGCTTCTCTGGCATGCAGGCCGCTGCCGCCACGTTCAATGCCAAGCCCACTAAT
GAAAAAGCGACCAAGTATGTCGCAGACATGACCGTTGACTCCGCAACTGGTCAAATCACGGTGACGCTTCAAAGTGGCAC
TTCTGCCGGCTTCCCCACTGACGTGCGTGGTAAGACCTTGATCTTTACGCCCAATGTGCAAAAAGTCGCTCTGGCTGACG
GCAAGCAAGGTGCTATTGACTGGGCTTGCGGCTCGACCACTGCAACGACAGCCGGTACTCGAGGCCTGGGTGCAGCTGGA
ACGGGTACTTTGCCTGCAAAGTATGCACCTGCCGAGTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Pilin (bacterial filament) (Pilin)

(37-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

53.723

100

0.58
  pilA2 Legionella pneumophila strain ERS1305867

42.045

100

0.425
  pilA Ralstonia pseudosolanacearum GMI1000

40.782

100

0.42
  pilA2 Legionella pneumophila str. Paris

39.773

100

0.402
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.778

100

0.391
  pilE Neisseria gonorrhoeae MS11

38.15

99.425

0.379
  comP Acinetobacter baylyi ADP1

37.714

100

0.379
  pilE Neisseria gonorrhoeae strain FA1090

35.955

100

0.368

Multiple sequence alignment