Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FQT45_RS10095 Genome accession   NZ_LR595858
Coordinates   2053523..2054782 (-) Length   419 a.a.
NCBI ID   WP_077323213.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2048523..2059782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS10065 (NCTC10228_02075) - 2048697..2050259 (-) 1563 WP_077323210.1 DUF2079 domain-containing protein -
  FQT45_RS10070 (NCTC10228_02076) - 2050387..2050686 (-) 300 WP_007893854.1 DUF1292 domain-containing protein -
  FQT45_RS10075 (NCTC10228_02077) ruvX 2050697..2051116 (-) 420 WP_077323211.1 Holliday junction resolvase RuvX -
  FQT45_RS10080 (NCTC10228_02078) - 2051113..2051382 (-) 270 WP_003083367.1 IreB family regulatory phosphoprotein -
  FQT45_RS10085 (NCTC10228_02079) spx 2051494..2051892 (-) 399 WP_007893913.1 transcriptional regulator Spx -
  FQT45_RS10090 (NCTC10228_02080) recA 2052291..2053433 (-) 1143 WP_077323212.1 recombinase RecA Machinery gene
  FQT45_RS10095 (NCTC10228_02081) cinA 2053523..2054782 (-) 1260 WP_077323213.1 competence/damage-inducible protein A Machinery gene
  FQT45_RS10100 (NCTC10228_02082) - 2054898..2055452 (-) 555 WP_077323214.1 DNA-3-methyladenine glycosylase I -
  FQT45_RS10105 (NCTC10228_02083) ruvA 2055459..2056052 (-) 594 WP_077323215.1 Holliday junction branch migration protein RuvA -
  FQT45_RS10110 (NCTC10228_02084) - 2056054..2057276 (-) 1223 Protein_1944 MFS transporter -
  FQT45_RS10115 (NCTC10228_02086) mutL 2057287..2059254 (-) 1968 WP_077323216.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45722.34 Da        Isoelectric Point: 5.3576

>NTDB_id=1128508 FQT45_RS10095 WP_077323213.1 2053523..2054782(-) (cinA) [Streptococcus pseudoporcinus strain NCTC10228]
MKAEIVTVGTEILTGQILNTNAQFLSEKMAEIGVDIYFQTAVGDNKDRLLEVLATASERSDLVILCGGLGPTEDDLTKQT
LASFLGRDLIFDKEARDKLDRFFASRPQSSRTTNNERQAQLIEGSRPIQNITGLAVGGIVESGGVSYVVLPGPPSELIPM
VNQRLLPMLTATQTRLYSRVLRFFGIGESQLVTILTNFISEQTDPTIAPYAKIGEVTLRLSTKALGLIEANQKLDKLEKA
ILDTPTMDSIPLRQFFYGYGEDNSLSREVVQLLKQKKKKLTAAESLTAGLFQSTLANYAGISEFFSGGFVTYSMLEKSRM
LNIPLSDLQANGVVSHYAAREMAEKARLLTESDIGISLTGVAGPDSLEGHEAGTVFIGISTEEKTDSIQIAIGGRSRSDI
RYIATLHAFNLVRKTLLKS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1128508 FQT45_RS10095 WP_077323213.1 2053523..2054782(-) (cinA) [Streptococcus pseudoporcinus strain NCTC10228]
ATGAAAGCGGAGATTGTTACAGTAGGCACAGAAATCTTAACTGGTCAAATTCTTAATACGAATGCTCAGTTTTTATCCGA
AAAAATGGCTGAGATAGGAGTTGATATCTATTTTCAAACAGCCGTCGGGGACAACAAAGATCGCTTGCTGGAGGTTCTTG
CCACAGCAAGTGAACGTAGTGATCTTGTTATTCTGTGTGGAGGCCTTGGCCCAACAGAAGATGATTTAACCAAGCAAACA
TTAGCAAGTTTCTTGGGGCGTGATTTGATTTTTGACAAAGAAGCTAGGGATAAATTGGATCGCTTTTTTGCTTCTCGTCC
GCAAAGTTCTCGTACTACTAATAATGAGAGGCAGGCGCAGTTGATTGAAGGTTCAAGACCTATTCAAAATATTACGGGAC
TAGCGGTAGGGGGGATAGTGGAGAGTGGCGGTGTTTCTTATGTTGTCTTACCTGGTCCTCCTTCTGAATTGATACCAATG
GTTAATCAACGATTATTACCGATGCTAACTGCGACTCAGACTAGGCTTTATTCGCGTGTATTACGCTTTTTTGGTATTGG
TGAAAGTCAACTAGTCACTATTCTAACCAACTTCATATCTGAGCAGACTGATCCAACGATCGCGCCTTATGCCAAGATAG
GTGAAGTAACATTGCGTTTATCCACCAAGGCATTGGGGCTGATAGAGGCAAATCAAAAGCTAGATAAACTTGAAAAAGCT
ATTTTAGATACCCCAACGATGGACAGTATTCCCTTAAGGCAGTTCTTTTATGGTTATGGTGAAGATAATAGTTTATCAAG
GGAAGTTGTTCAGTTACTCAAGCAAAAGAAGAAAAAACTTACAGCAGCTGAGAGTCTAACAGCTGGACTTTTTCAGTCAA
CCTTAGCTAATTATGCAGGGATCTCTGAATTTTTTTCAGGCGGGTTTGTGACCTACAGTATGTTAGAAAAGTCAAGAATG
CTGAACATTCCTTTATCTGATTTACAAGCTAATGGGGTGGTTAGCCACTATGCAGCCCGAGAAATGGCTGAGAAAGCGCG
GTTGTTAACTGAGTCAGATATAGGAATTAGTTTAACAGGCGTTGCAGGGCCAGATTCTCTAGAGGGACATGAGGCGGGAA
CTGTTTTTATCGGCATTTCGACAGAGGAAAAAACAGATTCTATCCAAATTGCAATTGGTGGACGGAGTCGTTCTGATATT
CGTTATATAGCAACGCTACATGCTTTTAATTTGGTCCGAAAAACTTTATTAAAAAGTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

68.825

99.523

0.685
  cinA Streptococcus mitis SK321

68.345

99.523

0.68
  cinA Streptococcus pneumoniae Rx1

67.866

99.523

0.675
  cinA Streptococcus pneumoniae TIGR4

67.866

99.523

0.675
  cinA Streptococcus pneumoniae R6

67.866

99.523

0.675
  cinA Streptococcus pneumoniae D39

67.626

99.523

0.673
  cinA Streptococcus mitis NCTC 12261

67.626

99.523

0.673
  cinA Streptococcus suis isolate S10

52.163

99.284

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.933

99.761

0.458

Multiple sequence alignment