Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   FGL12_RS10895 Genome accession   NZ_LR594041
Coordinates   2221690..2222883 (+) Length   397 a.a.
NCBI ID   WP_012131081.1    Uniprot ID   A0AB34SBT8
Organism   Streptococcus gordonii strain NCTC9124     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2216690..2227883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS10855 (NCTC9124_02190) ychF 2217001..2218116 (-) 1116 WP_012131077.1 redox-regulated ATPase YchF -
  FGL12_RS10870 (NCTC9124_02193) comE/comE2 2218438..2219205 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  FGL12_RS10875 (NCTC9124_02194) comD/comD1 2219202..2220563 (-) 1362 WP_012131078.1 competence system sensor histidine kinase ComD Regulator
  FGL12_RS10880 (NCTC9124_02195) comC/comC1 2220579..2220731 (-) 153 WP_012131079.1 bacteriocin Regulator
  FGL12_RS10890 (NCTC9124_02197) rlmH 2221017..2221496 (-) 480 WP_012131080.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL12_RS10895 (NCTC9124_02198) htrA 2221690..2222883 (+) 1194 WP_012131081.1 S1C family serine protease Regulator
  FGL12_RS10900 (NCTC9124_02199) spo0J 2222949..2223713 (+) 765 WP_012131082.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 397 a.a.        Molecular weight: 42183.77 Da        Isoelectric Point: 4.9802

>NTDB_id=1127541 FGL12_RS10895 WP_012131081.1 2221690..2222883(+) (htrA) [Streptococcus gordonii strain NCTC9124]
MKNSSNFFKKTLQVFIVLLVGFIGGVAGTWGFSYFSTPHSATNNNQKTATTVTTSYKNSNSTTEAVDKVKDAVVSVITYS
ESNSDAIFDNNNSGNENDQVASEGSGVIYRKDKDYAYLVTNTHVINGAKKVDIRLADGNKVPGEIVGTDTYSDISVVRIP
ADKVKNVAEFGDSSKLTVGETAIAIGSPLGSDYANTVTQGIVSSLSRNVSSRSEDGQTIATQAIQTDAAINPGNSGGPLV
NIQGQVIGITSSKIANTNNGSTSVEGMGFAIPSNDVVNIIEQLEKNGKVIRPALGIQMVNLSSLSSSSSDRLKLPDNVKN
GVVVRSTQTGMPADGKLEKYDVITKIDDTEISSASDIQSALYKHSINEEIKVTYYRDGKEQTTTIKLTKSTDDLSSE

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=1127541 FGL12_RS10895 WP_012131081.1 2221690..2222883(+) (htrA) [Streptococcus gordonii strain NCTC9124]
ATGAAAAACTCTTCAAATTTCTTTAAAAAAACATTGCAAGTTTTCATTGTTTTGTTAGTTGGTTTTATAGGTGGTGTTGC
TGGAACATGGGGATTTTCTTATTTTTCAACACCTCATTCAGCCACAAATAATAATCAGAAAACAGCGACTACAGTAACAA
CATCCTATAAAAATAGTAATTCTACAACAGAGGCTGTTGATAAAGTAAAAGATGCGGTTGTCTCTGTCATTACATATTCT
GAATCTAATTCAGATGCTATTTTCGACAACAATAATTCAGGAAATGAAAATGATCAGGTAGCTAGCGAAGGATCTGGTGT
TATCTATAGAAAAGATAAGGATTATGCTTACTTAGTTACCAATACACACGTTATCAATGGAGCAAAAAAAGTTGATATCC
GTCTTGCTGATGGGAATAAGGTTCCTGGTGAAATAGTCGGGACTGATACATATTCTGATATTTCTGTAGTCAGAATTCCT
GCCGATAAAGTTAAAAATGTGGCAGAATTTGGGGATTCTAGTAAATTAACTGTTGGGGAAACTGCCATTGCAATCGGAAG
TCCTCTTGGATCTGATTATGCTAATACAGTGACTCAGGGAATTGTTTCTAGTCTAAGCCGTAATGTTTCTTCACGATCAG
AAGATGGTCAGACAATTGCTACTCAAGCTATTCAAACTGATGCAGCAATTAATCCAGGTAACTCTGGTGGTCCTCTTGTA
AACATTCAAGGTCAAGTTATTGGTATTACCTCTAGTAAAATTGCTAACACCAATAATGGTAGTACTTCTGTTGAGGGAAT
GGGATTTGCAATCCCATCCAATGATGTTGTAAATATCATTGAACAATTAGAAAAGAATGGTAAAGTCATTCGACCAGCAT
TAGGAATTCAAATGGTCAACTTAAGTAGTTTGTCTTCTTCAAGCTCTGATCGATTAAAACTTCCAGACAATGTTAAAAAT
GGTGTCGTTGTTCGTTCAACACAAACTGGAATGCCTGCTGATGGTAAGTTAGAAAAATATGATGTGATTACAAAAATTGA
TGATACAGAAATATCATCTGCTAGCGATATTCAATCAGCTCTTTATAAACATTCAATTAATGAAGAAATTAAAGTTACTT
ATTATCGTGATGGAAAAGAGCAAACAACAACTATTAAACTAACTAAATCAACTGATGATTTAAGCTCTGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

100

100

1

  htrA Streptococcus mitis NCTC 12261

66.332

100

0.665

  htrA Streptococcus pneumoniae Rx1

66.414

99.748

0.662

  htrA Streptococcus pneumoniae D39

66.414

99.748

0.662

  htrA Streptococcus pneumoniae R6

66.414

99.748

0.662

  htrA Streptococcus pneumoniae TIGR4

66.414

99.748

0.662

  htrA Streptococcus mutans UA159

56.14

100

0.564


Multiple sequence alignment