Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   FGL12_RS10880 Genome accession   NZ_LR594041
Coordinates   2220579..2220731 (-) Length   50 a.a.
NCBI ID   WP_012131079.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215579..2225731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS10850 (NCTC9124_02189) pth 2216358..2216927 (-) 570 WP_012131076.1 aminoacyl-tRNA hydrolase -
  FGL12_RS10855 (NCTC9124_02190) ychF 2217001..2218116 (-) 1116 WP_012131077.1 redox-regulated ATPase YchF -
  FGL12_RS10870 (NCTC9124_02193) comE/comE2 2218438..2219205 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  FGL12_RS10875 (NCTC9124_02194) comD/comD1 2219202..2220563 (-) 1362 WP_012131078.1 competence system sensor histidine kinase ComD Regulator
  FGL12_RS10880 (NCTC9124_02195) comC/comC1 2220579..2220731 (-) 153 WP_012131079.1 bacteriocin Regulator
  FGL12_RS10890 (NCTC9124_02197) rlmH 2221017..2221496 (-) 480 WP_012131080.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FGL12_RS10895 (NCTC9124_02198) htrA 2221690..2222883 (+) 1194 WP_012131081.1 S1C family serine protease Regulator
  FGL12_RS10900 (NCTC9124_02199) spo0J 2222949..2223713 (+) 765 WP_012131082.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 6146.21 Da        Isoelectric Point: 10.8831

>NTDB_id=1127540 FGL12_RS10880 WP_012131079.1 2220579..2220731(-) (comC/comC1) [Streptococcus gordonii strain NCTC9124]
MKKKNKQNLLPKELQQFEILTERKLEQVTGGDVRSNKIRLWWENIFFNKK

Nucleotide


Download         Length: 153 bp        

>NTDB_id=1127540 FGL12_RS10880 WP_012131079.1 2220579..2220731(-) (comC/comC1) [Streptococcus gordonii strain NCTC9124]
ATGAAAAAGAAAAACAAACAAAATCTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGAAAGAAAATTAGAGCA
AGTTACTGGTGGAGATGTTCGCTCAAACAAAATTAGATTATGGTGGGAAAATATATTCTTTAATAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

100

100

1
  comC/comC2 Streptococcus gordonii strain NCTC7865

74

100

0.74

Multiple sequence alignment