Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL12_RS08730 Genome accession   NZ_LR594041
Coordinates   1806902..1808893 (-) Length   663 a.a.
NCBI ID   WP_138101314.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801902..1813893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08710 (NCTC9124_01755) amiF 1802405..1803328 (-) 924 WP_138101313.1 ATP-binding cassette domain-containing protein Regulator
  FGL12_RS08715 (NCTC9124_01756) amiE 1803339..1804406 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL12_RS08720 (NCTC9124_01757) amiD 1804415..1805341 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FGL12_RS08725 (NCTC9124_01758) amiC 1805341..1806837 (-) 1497 WP_048775316.1 ABC transporter permease Regulator
  FGL12_RS08730 (NCTC9124_01759) amiA 1806902..1808893 (-) 1992 WP_138101314.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08735 (NCTC9124_01760) amiA 1809173..1811155 (-) 1983 WP_138101315.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08740 (NCTC9124_01761) amiA 1811406..1813364 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73340.76 Da        Isoelectric Point: 5.0247

>NTDB_id=1127509 FGL12_RS08730 WP_138101314.1 1806902..1808893(-) (amiA) [Streptococcus gordonii strain NCTC9124]
MKKGKILALAGVALLATGVLAACSNSTSNSSNSSSSGADQVFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYTLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQSADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSAAFSKVEKEFKDNIVYTPQDSTSYLVGVNIDRQA
YNHTAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTATAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAAEQVGLKEYAKLVDEAA
AEKTDVNKRYEKYATAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=1127509 FGL12_RS08730 WP_138101314.1 1806902..1808893(-) (amiA) [Streptococcus gordonii strain NCTC9124]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGTTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATCGATGGTCTTTTAGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATACACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAGTATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAA
CTCTAAAACAACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAATCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTACTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACATATTTTGATGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCAGCTAGACTAGCTCCTACAAGTGCTGCCTTCTCTAAAGTCGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTACGAGCTATTTAGTTGGGGTGAACATTGATCGTCAAGCG
TACAATCACACAGCTAAATCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGC
TTTGAGTTTTGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GACGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAGGAAAAAGCAAAGGCTGAATTTGCGAA
AGCTAAAAAAGCTCTTCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTACTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACCTATTATGCTGCTTCAGCTGCCGAAGAAGATTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAACACCAAAACATTCT
TAGGGTTTGATGGTAAAGAAAATGCAGCTGCAGAACAAGTTGGTTTGAAGGAGTATGCTAAGCTGGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAACTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.549

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.098

100

0.593

Multiple sequence alignment