Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGL12_RS08720 Genome accession   NZ_LR594041
Coordinates   1804415..1805341 (-) Length   308 a.a.
NCBI ID   WP_008809623.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799415..1810341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08705 (NCTC9124_01754) comR/comR2 1801721..1802203 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL12_RS08710 (NCTC9124_01755) amiF 1802405..1803328 (-) 924 WP_138101313.1 ATP-binding cassette domain-containing protein Regulator
  FGL12_RS08715 (NCTC9124_01756) amiE 1803339..1804406 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL12_RS08720 (NCTC9124_01757) amiD 1804415..1805341 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FGL12_RS08725 (NCTC9124_01758) amiC 1805341..1806837 (-) 1497 WP_048775316.1 ABC transporter permease Regulator
  FGL12_RS08730 (NCTC9124_01759) amiA 1806902..1808893 (-) 1992 WP_138101314.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34645.61 Da        Isoelectric Point: 9.7223

>NTDB_id=1127507 FGL12_RS08720 WP_008809623.1 1804415..1805341(-) (amiD) [Streptococcus gordonii strain NCTC9124]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIIMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127507 FGL12_RS08720 WP_008809623.1 1804415..1805341(-) (amiD) [Streptococcus gordonii strain NCTC9124]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCTTA
TTCGTATTGGAGATCTGTTATTCGCCAATTTCTGAAGAAGAAATCTACCATTATTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCGATGTTGTCTGATTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTGTGGTTTGGTGC
TCGAAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCTAAATCTGTTGACCGCGTTATGATGGAAGTTTATAATGTCATCTCAAATATTCCGCAATTATTGATTGTTATTGTC
TTGACTTATTCGATCGGAGCTGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTGATCATGACGACCAGCTCTCAAATGCTTCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGACGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.143

100

0.821
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment