Detailed information NTG1127505

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FGL12_RS08710
• Genome accession: NZ_LR594041
• Coordinates: 1802405..1803328 (-)
• Length: 307 a.a.
• NCBI ID: WP_138101313.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain NCTC9124
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1797405..1808328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL12_RS08705 (NCTC9124_01754)	comR/comR2	1801721..1802203 (-)	483	WP_012130755.1	sigma-70 family RNA polymerase sigma factor	Regulator
FGL12_RS08710 (NCTC9124_01755)	amiF	1802405..1803328 (-)	924	WP_138101313.1	ATP-binding cassette domain-containing protein	Regulator
FGL12_RS08715 (NCTC9124_01756)	amiE	1803339..1804406 (-)	1068	WP_008809622.1	ABC transporter ATP-binding protein	Regulator
FGL12_RS08720 (NCTC9124_01757)	amiD	1804415..1805341 (-)	927	WP_008809623.1	oligopeptide ABC transporter permease OppC	Regulator
FGL12_RS08725 (NCTC9124_01758)	amiC	1805341..1806837 (-)	1497	WP_048775316.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34921.20 Da
• Isoelectric Point: 7.2026

>NTDB_id=1127505 FGL12_RS08710 WP_138101313.1 1802405..1803328(-) (amiF) [Streptococcus gordonii strain NCTC9124]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
KSSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1127505 FGL12_RS08710 WP_138101313.1 1802405..1803328(-) (amiF) [Streptococcus gordonii strain NCTC9124]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTCGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGTGAAACTTTCTCGCTCGTAGGTGAATCCGGTTCAGGGAAAACTACAATTGGTCGTG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGTAAGCAGATTAATGGGAAGAAGTCTAGAAAA
AAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCATTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAGAATATTA
TTCATGAAGTTGGATTGCTTTCTGAACATTTGACGCGTTATCCGCATGAATTCTCAGGAGGGCAACGCCAACGTATTGGG
ATAGCGCGGGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTGCTAAATCTTCTAAAGAAATTCCAAAAAGAACTGGGGTTGACCTATCTATTTATCGCTCACGATTTGTCAGTGG
TACGTTTCATTTCAGATCGTATTGCAGTAATCTATAAAGGTGTAATTGTTGAAGTAGCTGAAACGGAAGAGCTCTTTAAT
AACCCAATTCATCCTTATACCAAATCGTTATTATCAGCCGTTCCAATTCCAGATCCAATCTTAGAACGTAAAAAAGTACT
TAAAGTCTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACCGAAGTAGAGAACTATAAAAAAGAGCTCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	86.275	99.674	0.86
amiF	Streptococcus thermophilus LMD-9	85.948	99.674	0.857
amiF	Streptococcus salivarius strain HSISS4	85.294	99.674	0.85