Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FGL12_RS08715 Genome accession   NZ_LR594041
Coordinates   1803339..1804406 (-) Length   355 a.a.
NCBI ID   WP_008809622.1    Uniprot ID   A0A0F2CNN2
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798339..1809406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08705 (NCTC9124_01754) comR/comR2 1801721..1802203 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL12_RS08710 (NCTC9124_01755) amiF 1802405..1803328 (-) 924 WP_138101313.1 ATP-binding cassette domain-containing protein Regulator
  FGL12_RS08715 (NCTC9124_01756) amiE 1803339..1804406 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL12_RS08720 (NCTC9124_01757) amiD 1804415..1805341 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FGL12_RS08725 (NCTC9124_01758) amiC 1805341..1806837 (-) 1497 WP_048775316.1 ABC transporter permease Regulator
  FGL12_RS08730 (NCTC9124_01759) amiA 1806902..1808893 (-) 1992 WP_138101314.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39824.61 Da        Isoelectric Point: 4.8872

>NTDB_id=1127506 FGL12_RS08715 WP_008809622.1 1803339..1804406(-) (amiE) [Streptococcus gordonii strain NCTC9124]
MIQNKNVILTARDIVVEFDVRDKVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVAQGVINYRGQDL
TTLKSNKDWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKDAKEAKEMAIDYMKKVGIPDAERRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQNEYRFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLANDHGELFSIPGTPPSLYTELKGDAFALRSDYAMQIDFEEKAPQFQVTETHWAK
TWLLHEDAPKVHKPEIIENLHDKIRLNMGFAHLEG

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1127506 FGL12_RS08715 WP_008809622.1 1803339..1804406(-) (amiE) [Streptococcus gordonii strain NCTC9124]
ATGATACAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCCTGACAGC
CATCCGAGGTGTATCCCTTGATTTGGTTGAAGGAGAAGTATTAGCTTTGGTAGGAGAATCAGGATCAGGTAAGTCTGTGT
TGACTAAAACATTCACTGGGATGTTGGAAGATAATGGGCGCGTTGCGCAAGGTGTTATTAACTACCGTGGTCAAGATTTG
ACAACTTTAAAATCAAATAAAGATTGGGAAAAAATTCGTGGTGCTAAGATCGCTACGATTTTCCAAGATCCTATGACTAG
TTTGGATCCAATCAATACAATAGGAAGCCAAATTACGGAAGTTATTATCAAACACCAAGGCAAAGATGCAAAAGAAGCCA
AAGAAATGGCAATCGACTATATGAAAAAAGTTGGAATACCTGATGCAGAACGTCGGTTTGAAGAATATCCTTTCCAATAT
TCTGGAGGTATGCGTCAACGGATTGTTATCGCTATTGCTCTTGCTTGTCGTCCAGATATTCTAATTTGTGATGAGCCAAC
CACGGCTTTAGATGTGACAATACAAGCACAAATTATCGAACTTTTAAAATCATTGCAGAACGAATACCGCTTTACAACTA
TATTTATCACTCATGACTTGGGTGTTGTTGCTAGCATTGCCGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTTGAA
TACGGAACGGTTGAAGAAATTTTTTACGATCCACGCCATCCTTATACATGGAGCTTGTTATCTAGCTTGCCACAGTTGGC
CAATGATCATGGTGAACTCTTCTCTATCCCAGGAACTCCTCCGTCTCTTTATACCGAGTTGAAAGGTGATGCCTTTGCTC
TTCGTTCGGATTACGCTATGCAAATTGATTTCGAAGAAAAAGCACCACAATTCCAAGTCACAGAAACTCACTGGGCTAAA
ACTTGGTTGCTTCATGAAGATGCACCAAAGGTTCACAAGCCTGAAATTATTGAAAATTTACATGATAAAATTCGCTTGAA
TATGGGCTTTGCTCATTTAGAAGGCTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CNN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

85.552

99.437

0.851
  amiE Streptococcus thermophilus LMD-9

85.552

99.437

0.851
  oppD Streptococcus mutans UA159

54.155

98.31

0.532

Multiple sequence alignment