Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGL12_RS08725 Genome accession   NZ_LR594041
Coordinates   1805341..1806837 (-) Length   498 a.a.
NCBI ID   WP_048775316.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800341..1811837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08705 (NCTC9124_01754) comR/comR2 1801721..1802203 (-) 483 WP_012130755.1 sigma-70 family RNA polymerase sigma factor Regulator
  FGL12_RS08710 (NCTC9124_01755) amiF 1802405..1803328 (-) 924 WP_138101313.1 ATP-binding cassette domain-containing protein Regulator
  FGL12_RS08715 (NCTC9124_01756) amiE 1803339..1804406 (-) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  FGL12_RS08720 (NCTC9124_01757) amiD 1804415..1805341 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FGL12_RS08725 (NCTC9124_01758) amiC 1805341..1806837 (-) 1497 WP_048775316.1 ABC transporter permease Regulator
  FGL12_RS08730 (NCTC9124_01759) amiA 1806902..1808893 (-) 1992 WP_138101314.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08735 (NCTC9124_01760) amiA 1809173..1811155 (-) 1983 WP_138101315.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55581.56 Da        Isoelectric Point: 9.9197

>NTDB_id=1127508 FGL12_RS08725 WP_048775316.1 1805341..1806837(-) (amiC) [Streptococcus gordonii strain NCTC9124]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAIPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1127508 FGL12_RS08725 WP_048775316.1 1805341..1806837(-) (amiC) [Streptococcus gordonii strain NCTC9124]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACGGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAGTTTGAAGAAAGTAAGCAATTTTATGCTGTTCGTGAGGTACCAGTTCTTGAACGTGTTCTTG
GCTTCTACGGAAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGATCCAGCTATTGGTTGGTCTGTAGTTGGATCAGGTACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTCCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTAT
TACAGGTTATTTCACAAGGGCAAGGACAAACCAAGTCATCTGAGGTTCAATTCCCTACAGGAAAGAAAACTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTACGGAAAAGACGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCGATTATTGGTTTGATTGGTATTGCAATCT
CTTATTTGATTGCTATTCCATTAGGGTCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACGGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCATCTGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCGTACGTTCTTCCAGCAGTTATTCTGGGACTTTTGGGTGCACCAA
GCACAGCTATCTGGATTCGTCGCTATATGATTGACTTGCAATCCCAAGACTTTGTACGTTTTGCTCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGGGCAGTTAT
TGGTGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCTTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAACTCTATGGTAGTCGGCTTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.317

100

0.793
  amiC Streptococcus thermophilus LMG 18311

78.715

100

0.787
  amiC Streptococcus thermophilus LMD-9

78.514

100

0.785

Multiple sequence alignment