Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL12_RS08735 Genome accession   NZ_LR594041
Coordinates   1809173..1811155 (-) Length   660 a.a.
NCBI ID   WP_138101315.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804173..1816155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08720 (NCTC9124_01757) amiD 1804415..1805341 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  FGL12_RS08725 (NCTC9124_01758) amiC 1805341..1806837 (-) 1497 WP_048775316.1 ABC transporter permease Regulator
  FGL12_RS08730 (NCTC9124_01759) amiA 1806902..1808893 (-) 1992 WP_138101314.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08735 (NCTC9124_01760) amiA 1809173..1811155 (-) 1983 WP_138101315.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08740 (NCTC9124_01761) amiA 1811406..1813364 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08745 (NCTC9124_01762) amiA 1813581..1815542 (-) 1962 WP_012130761.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73464.88 Da        Isoelectric Point: 5.0817

>NTDB_id=1127510 FGL12_RS08735 WP_138101315.1 1809173..1811155(-) (amiA) [Streptococcus gordonii strain NCTC9124]
MKKRNVLAMAGVTLLAVGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSSKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKGITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSVRNLYVPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKETLQAEGVEFPIHLDIPAIQTNTLGVKRVQSMKQSIEKSLGTDNVVVDIQMLSQED
VQNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILLPSGSNGGGAGVTKVVPFTTPFGWTGNKSDGSVLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1127510 FGL12_RS08735 WP_138101315.1 1809173..1811155(-) (amiA) [Streptococcus gordonii strain NCTC9124]
ATGAAGAAACGCAATGTTTTAGCCATGGCTGGTGTTACTTTACTTGCTGTTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGGTCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTGTCAA
GTAAGACCTCTACCCACGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCTCTTGCAGAAGACTGGAGTGTATCTAAGGACGGCTTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAGTCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCAACAGTA
GGGATTAAAGCTGTCGATGATCATACCTTGCAGTTCACTTTGGAACATCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTCCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGAGACAAATTCGGTCAAGCTACTGACCCGACAAGTA
TCCTTTATAATGGTCCTTTCTTGTTGAAAGGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAGGATAATGTCCATGTCGACAATGTTAAATTAGCTTTCTATGATGGACAAGACCAAGAATCCTTAATTCGTGGCTT
TAAAGACGGCTCTTATAGTAAGGCGCGTGTTTATCCTCGTAGTTCAAACTATGCGTCTGTAGAGAAAGAATATAAAGATA
ATATTATCTTTAGTCCTCAAGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTATAATCATACTTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGACTTCCGTCAGGCTTTGAACTTTGCTTA
TGACCGTAAGGCCTATTCTGACCAAGTGAACGGTGAAGAAGGAGCCCTTAAATCTGTTCGTAACCTCTATGTCCCACCAA
CATTTGTTCAAGTTGGTGACAAGAATTTTGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCCAAAGCGGAATTCGCCAAAGCAAAGGAAACTCT
TCAAGCTGAAGGTGTAGAATTCCCTATTCATTTAGATATTCCAGCAATTCAAACTAACACTCTTGGTGTTAAACGTGTTC
AATCAATGAAACAGTCTATTGAAAAGAGTTTAGGGACAGACAACGTTGTAGTTGATATTCAAATGCTATCCCAAGAAGAT
GTTCAGAACATCACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAGCTTGGTTGGACTCCTGA
CTTCCAAGATCCATCATCATACTTAGAGATTCTACACCCAGAAACAGGTGATAATACTAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACGAAACGCTACGAAAAATATGCAGCTGCACAAGCGTGGTTGACAGATAGTTCAATTCTACTTCCAAGTGG
TTCTAACGGTGGTGGAGCAGGCGTTACTAAAGTCGTTCCGTTCACAACTCCATTTGGTTGGACTGGTAACAAATCGGATG
GATCTGTTCTCTACAAATATATTAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.514

100

0.606
  amiA3 Streptococcus thermophilus LMD-9

59.455

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

59.002

100

0.591

Multiple sequence alignment