Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL12_RS08745 Genome accession   NZ_LR594041
Coordinates   1813581..1815542 (-) Length   653 a.a.
NCBI ID   WP_012130761.1    Uniprot ID   A8AYX8
Organism   Streptococcus gordonii strain NCTC9124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808581..1820542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL12_RS08735 (NCTC9124_01760) amiA 1809173..1811155 (-) 1983 WP_138101315.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08740 (NCTC9124_01761) amiA 1811406..1813364 (-) 1959 WP_012130760.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08745 (NCTC9124_01762) amiA 1813581..1815542 (-) 1962 WP_012130761.1 peptide ABC transporter substrate-binding protein Regulator
  FGL12_RS08750 (NCTC9124_01763) pbp3 1815832..1817070 (+) 1239 WP_012130762.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL12_RS08755 (NCTC9124_01764) sufB 1817278..1818690 (-) 1413 WP_012130763.1 Fe-S cluster assembly protein SufB -
  FGL12_RS08760 (NCTC9124_01765) sufU 1818708..1819145 (-) 438 WP_012130764.1 Fe-S cluster assembly sulfur transfer protein SufU -
  FGL12_RS08765 (NCTC9124_01766) - 1819132..1820364 (-) 1233 WP_012130765.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72642.79 Da        Isoelectric Point: 4.9229

>NTDB_id=1127512 FGL12_RS08745 WP_012130761.1 1813581..1815542(-) (amiA) [Streptococcus gordonii strain NCTC9124]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRATTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AIDDYTIQYTLNQPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATTFFYAFNYNRKAYNFTAKTTD
AQKTSTTAALLNKDFRQAINFAFNRTAYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVKEDLASYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKDALQAQGVEFPIHLDLPVDQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEKGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGTPLVMKAVPFTKPYSLVGIKGDAYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKT
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1127512 FGL12_RS08745 WP_012130761.1 1813581..1815542(-) (amiA) [Streptococcus gordonii strain NCTC9124]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACCTTAGCAGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAAACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTGCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTGTCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTATACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCGCAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGTTGC
CGATTGTTCAAAGCTCTATCAAAGGTTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGATTGACGATTATACAATCCAATATACACTCAATCAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACTGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCTAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACTTACTTTGATGGTTCTGATCAAGAAGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTACAAAAACAATACAAAGATAATATTGTATACT
CTCCTCAAGATGCAACGACATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTACAATTTCACAGCCAAGACAACAGAT
GCTCAAAAGACATCTACAACAGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCAATCAACTTCGCTTTCAATCGGACGGC
TTATGGAGCGCAGCAAAACGGTCAAGAGGGGGCAACTAGCTCACTTAGAAACAGCTTGGTGCCGCCAACATTCGTTCAGA
TTGGCGAAAAGAACTTCGGAGACATCGTTAAAGAAGATTTGGCGAGCTATGGTGATGAGTGGAAGGGTGTCAAATTAGAC
GATGCTCAAGATGGACTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAAGCAAAAGATGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACTTAGATCTTCCTGTTGATCAAACAAACAACCTCTTGGTACAACAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCCCTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAATAAAAATAATGTA
ACGTACTTTGCGGAGACTGCGGCTCAAAAAGACTACGATATCAACATTGCTGGTTGGGGTCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAAAAAGGACAAAATGCTGATT
TAGCAGACAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTACTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGCTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAAACA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AYX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

56.753

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

56.753

100

0.573

Multiple sequence alignment