Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   FGK91_RS06460 Genome accession   NZ_LR590483
Coordinates   1269681..1269863 (-) Length   60 a.a.
NCBI ID   WP_111703187.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8318     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1269681..1306158 1269681..1269863 within 0


Gene organization within MGE regions


Location: 1269681..1306158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK91_RS06460 (NCTC8318_01290) prx 1269681..1269863 (-) 183 WP_111703187.1 Paratox Regulator
  FGK91_RS06465 (NCTC8318_01291) speA 1270084..1270839 (+) 756 WP_009880239.1 streptococcal pyrogenic exotoxin SpeA -
  FGK91_RS06470 (NCTC8318_01292) - 1270961..1271620 (-) 660 WP_009880240.1 hypothetical protein -
  FGK91_RS06475 (NCTC8318_01293) - 1271620..1271841 (-) 222 WP_009880241.1 hypothetical protein -
  FGK91_RS06480 (NCTC8318_01294) - 1271851..1272624 (-) 774 WP_011054795.1 hypothetical protein -
  FGK91_RS06485 (NCTC8318_01295) - 1272635..1273237 (-) 603 WP_011054796.1 hypothetical protein -
  FGK91_RS06490 (NCTC8318_01296) - 1273249..1274013 (-) 765 WP_011054797.1 CHAP domain-containing protein -
  FGK91_RS06495 (NCTC8318_01297) - 1274015..1274347 (-) 333 WP_011054798.1 phage holin -
  FGK91_RS06500 (NCTC8318_01298) - 1274347..1274670 (-) 324 WP_015055952.1 hypothetical protein -
  FGK91_RS09525 (NCTC8318_01299) - 1274684..1274806 (-) 123 WP_015055953.1 hypothetical protein -
  FGK91_RS06505 (NCTC8318_01300) - 1274820..1275167 (-) 348 WP_009880247.1 DUF1366 domain-containing protein -
  FGK91_RS06510 (NCTC8318_01301) - 1275178..1277040 (-) 1863 WP_009880248.1 DUF859 family phage minor structural protein -
  FGK91_RS06515 (NCTC8318_01302) - 1277045..1280485 (-) 3441 WP_011054801.1 glucosaminidase domain-containing protein -
  FGK91_RS06520 (NCTC8318_01303) - 1280486..1281970 (-) 1485 WP_009880250.1 distal tail protein Dit -
  FGK91_RS06525 (NCTC8318_01304) - 1281971..1283776 (-) 1806 WP_011054802.1 tail protein -
  FGK91_RS06530 (NCTC8318_01305) - 1283769..1284227 (-) 459 WP_009880253.1 hypothetical protein -
  FGK91_RS06535 (NCTC8318_01306) - 1284200..1284517 (-) 318 WP_009880254.1 hypothetical protein -
  FGK91_RS06540 (NCTC8318_01307) - 1284530..1285036 (-) 507 WP_009880255.1 phage major tail protein, TP901-1 family -
  FGK91_RS06545 (NCTC8318_01308) - 1285048..1285458 (-) 411 WP_009880256.1 DUF5072 family protein -
  FGK91_RS06550 (NCTC8318_01309) - 1285460..1285855 (-) 396 WP_009880257.1 hypothetical protein -
  FGK91_RS06555 (NCTC8318_01310) - 1285852..1286163 (-) 312 WP_009880258.1 hypothetical protein -
  FGK91_RS06560 (NCTC8318_01311) - 1286160..1286504 (-) 345 WP_009880259.1 hypothetical protein -
  FGK91_RS06565 (NCTC8318_01312) - 1286518..1286811 (-) 294 WP_009880260.1 HeH/LEM domain-containing protein -
  FGK91_RS06570 (NCTC8318_01313) - 1286823..1287713 (-) 891 WP_009880261.1 hypothetical protein -
  FGK91_RS06575 (NCTC8318_01314) - 1287731..1288300 (-) 570 WP_146710355.1 DUF4355 domain-containing protein -
  FGK91_RS06580 (NCTC8318_01315) - 1288450..1288716 (-) 267 WP_011054805.1 hypothetical protein -
  FGK91_RS06585 (NCTC8318_01316) - 1288723..1289631 (-) 909 WP_009880264.1 minor capsid protein -
  FGK91_RS06590 (NCTC8318_01317) - 1289600..1290925 (-) 1326 WP_009880265.1 phage portal protein -
  FGK91_RS06595 (NCTC8318_01318) - 1290925..1292199 (-) 1275 WP_009880266.1 PBSX family phage terminase large subunit -
  FGK91_RS06600 (NCTC8318_01319) - 1292189..1292569 (-) 381 WP_011285571.1 hypothetical protein -
  FGK91_RS06605 (NCTC8318_01320) - 1292913..1293353 (-) 441 WP_011017866.1 ArpU family phage packaging/lysis transcriptional regulator -
  FGK91_RS06610 (NCTC8318_01321) - 1293626..1294261 (-) 636 WP_021340848.1 N-6 DNA methylase -
  FGK91_RS06615 (NCTC8318_01322) - 1294261..1294662 (-) 402 WP_002987468.1 hypothetical protein -
  FGK91_RS06620 (NCTC8318_01323) - 1294760..1294987 (-) 228 WP_146710356.1 hypothetical protein -
  FGK91_RS06625 (NCTC8318_01324) - 1295000..1295674 (-) 675 WP_003057298.1 DNA methyltransferase -
  FGK91_RS06630 (NCTC8318_01325) - 1295671..1295955 (-) 285 WP_136105806.1 hypothetical protein -
  FGK91_RS06635 (NCTC8318_01326) - 1295952..1296386 (-) 435 WP_146710357.1 YopX family protein -
  FGK91_RS06640 (NCTC8318_01327) - 1296370..1296657 (-) 288 WP_146710378.1 nucleotide modification associated domain-containing protein -
  FGK91_RS06645 (NCTC8318_01328) - 1296711..1297067 (-) 357 WP_146710358.1 hypothetical protein -
  FGK91_RS06650 (NCTC8318_01329) - 1297064..1297504 (-) 441 WP_146710359.1 RusA family crossover junction endodeoxyribonuclease -
  FGK91_RS06655 (NCTC8318_01330) - 1297504..1297710 (-) 207 WP_146710360.1 hypothetical protein -
  FGK91_RS06660 (NCTC8318_01331) ssbA 1297723..1298148 (-) 426 WP_146710361.1 single-stranded DNA-binding protein Machinery gene
  FGK91_RS06665 (NCTC8318_01332) - 1298141..1298815 (-) 675 WP_146710362.1 ERF family protein -
  FGK91_RS06670 (NCTC8318_01333) - 1298816..1299298 (-) 483 WP_146710363.1 siphovirus Gp157 family protein -
  FGK91_RS06675 (NCTC8318_01334) - 1299320..1299574 (-) 255 WP_146710364.1 hypothetical protein -
  FGK91_RS06680 (NCTC8318_01335) - 1299567..1299911 (-) 345 WP_146710365.1 HTH domain-containing protein -
  FGK91_RS09315 (NCTC8318_01336) - 1299922..1300059 (-) 138 WP_011018145.1 hypothetical protein -
  FGK91_RS06685 (NCTC8318_01337) - 1300059..1300901 (-) 843 WP_063629027.1 ATP-binding protein -
  FGK91_RS06690 (NCTC8318_01338) - 1300911..1301813 (-) 903 WP_085613680.1 phage replisome organizer N-terminal domain-containing protein -
  FGK91_RS06695 (NCTC8318_01339) - 1301827..1302144 (-) 318 WP_111703179.1 helix-turn-helix transcriptional regulator -
  FGK91_RS09530 (NCTC8318_01340) - 1302160..1302294 (-) 135 WP_011528543.1 hypothetical protein -
  FGK91_RS06700 (NCTC8318_01341) - 1302325..1302576 (-) 252 WP_011528542.1 hypothetical protein -
  FGK91_RS06705 (NCTC8318_01342) - 1302671..1302889 (-) 219 WP_009881062.1 helix-turn-helix transcriptional regulator -
  FGK91_RS06710 (NCTC8318_01343) - 1303078..1303437 (+) 360 WP_011528540.1 helix-turn-helix transcriptional regulator -
  FGK91_RS06715 (NCTC8318_01344) - 1303421..1303798 (+) 378 WP_011054824.1 ImmA/IrrE family metallo-endopeptidase -
  FGK91_RS09320 (NCTC8318_01345) - 1303809..1303961 (+) 153 WP_011054825.1 hypothetical protein -
  FGK91_RS06720 (NCTC8318_01346) - 1304132..1304818 (+) 687 WP_043885029.1 hypothetical protein -
  FGK91_RS06725 (NCTC8318_01347) - 1304992..1306158 (+) 1167 WP_009880742.1 site-specific integrase -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6951.96 Da        Isoelectric Point: 4.2336

>NTDB_id=1127055 FGK91_RS06460 WP_111703187.1 1269681..1269863(-) (prx) [Streptococcus pyogenes strain NCTC8318]
MLYIDEFKEAIDKGDILGDTVAIVRKNGKIFDYVLPHEKVRDDEVVTVERVEDVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1127055 FGK91_RS06460 WP_111703187.1 1269681..1269863(-) (prx) [Streptococcus pyogenes strain NCTC8318]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAGGGGGATATTTTAGGTGACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTACCACACGAAAAAGTGAGAGATGATGAAGTTGTGACGGTAGAGAGAGTGGAAGACG
TGATGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

96.667

100

0.967

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

71.667

100

0.717

  prx Streptococcus pyogenes MGAS8232

71.667

100

0.717

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS315

73.81

70

0.517


Multiple sequence alignment