Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   EL216_RS09110 Genome accession   NZ_LR134440
Coordinates   1941639..1942877 (+) Length   412 a.a.
NCBI ID   WP_085391167.1    Uniprot ID   -
Organism   Neisseria animaloris strain NCTC12228     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936639..1947877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL216_RS09090 (NCTC12228_01834) - 1937162..1938490 (+) 1329 WP_085391185.1 LysM peptidoglycan-binding domain-containing M23 family metallopeptidase -
  EL216_RS09095 (NCTC12228_01835) - 1938600..1939220 (-) 621 WP_085391169.1 isochorismatase family protein -
  EL216_RS09105 (NCTC12228_01837) pilF 1939921..1941600 (+) 1680 WP_085391168.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL216_RS09110 (NCTC12228_01838) pilG 1941639..1942877 (+) 1239 WP_085391167.1 type II secretion system F family protein Machinery gene
  EL216_RS09115 (NCTC12228_01839) pilD 1942882..1943745 (+) 864 WP_085391166.1 A24 family peptidase Machinery gene
  EL216_RS09120 (NCTC12228_01840) coaE 1943749..1944369 (+) 621 WP_085391165.1 dephospho-CoA kinase -
  EL216_RS09125 (NCTC12228_01841) zapD 1944366..1945133 (+) 768 WP_085391164.1 cell division protein ZapD -
  EL216_RS09130 (NCTC12228_01842) yacG 1945137..1945325 (+) 189 WP_085391163.1 DNA gyrase inhibitor YacG -
  EL216_RS09135 (NCTC12228_01843) - 1945380..1945823 (-) 444 WP_085391162.1 TIGR01244 family sulfur transferase -
  EL216_RS09140 (NCTC12228_01844) - 1945891..1947648 (-) 1758 WP_085391161.1 M61 family metallopeptidase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45274.43 Da        Isoelectric Point: 9.9820

>NTDB_id=1122870 EL216_RS09110 WP_085391167.1 1941639..1942877(+) (pilG) [Neisseria animaloris strain NCTC12228]
MNQVKQGGRSAKADKGIRFNFEGRNTETEQIVRGEVVAKNEEEAKKKLQRRGIKPLRVSKVKAVRKKRITQEDITVFTRQ
LATMMKAGLPLMQAFEIVARGHSNPSMTQMLMQIRADVEQGSALGKAFAKHPKYFDRFYCNLIAAGEAGGVLESLLDKLA
VYKEKTQAIKKKVKSALTYPIAIIVVAIVLVFIMMVFVLPAFGEVYSNMGAELPGLTQIVMDMSKFFVDYAWVMVVSIIG
IGFGLYKWYKKSPALQKRADAMLLKLPIFGEIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGAAGNILYEEATHDIRA
KVTQGLSLTSSMQGTDMFPNMVLQMAAIGEESGSLDGMLNKVAEFYEDEVDNAVAQLSSLMEPIIMVVLGSIIGVILVAM
YLPLFNLGNVVG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1122870 EL216_RS09110 WP_085391167.1 1941639..1942877(+) (pilG) [Neisseria animaloris strain NCTC12228]
ATGAATCAAGTAAAGCAAGGTGGGCGTTCTGCTAAAGCAGATAAGGGTATACGTTTTAATTTTGAGGGTAGAAACACCGA
AACCGAACAAATTGTACGCGGTGAAGTAGTGGCCAAAAATGAAGAGGAGGCTAAAAAAAAGCTGCAACGGCGCGGTATTA
AGCCGTTGCGTGTTAGTAAAGTTAAAGCTGTTCGTAAAAAGCGCATTACACAAGAAGATATTACAGTATTTACCCGCCAA
CTTGCTACGATGATGAAAGCCGGATTGCCATTGATGCAGGCATTTGAGATTGTGGCAAGAGGTCACTCTAATCCTTCCAT
GACTCAGATGCTTATGCAGATTCGAGCAGATGTAGAGCAGGGGAGCGCACTGGGTAAAGCTTTCGCAAAGCATCCGAAGT
ATTTTGACCGGTTTTATTGTAATCTGATCGCTGCTGGTGAAGCCGGCGGTGTGTTAGAAAGTTTGCTGGATAAACTTGCT
GTTTATAAGGAAAAAACCCAAGCGATTAAGAAGAAAGTGAAAAGTGCGCTTACTTATCCGATAGCTATTATCGTAGTGGC
GATAGTGCTGGTATTTATCATGATGGTGTTTGTTCTTCCTGCATTCGGTGAAGTATATAGTAACATGGGAGCAGAGCTGC
CTGGACTAACACAAATTGTTATGGATATGTCAAAGTTTTTTGTTGATTATGCTTGGGTAATGGTAGTTTCCATAATTGGT
ATAGGGTTTGGTTTATATAAATGGTATAAAAAATCTCCTGCTCTTCAAAAAAGAGCGGATGCCATGCTATTGAAACTGCC
AATTTTTGGAGAGATTGTGAGGAAAGCGACAATTGCACGTTGGGCGCGTACTACGTCTACTTTATTTGCAGCCGGAGTAC
CTTTAGTTGAGGTGTTGGATTCTGTGGCCGGTGCTGCCGGTAATATCTTGTATGAAGAGGCTACGCACGATATTCGTGCT
AAAGTAACACAAGGTTTGTCATTGACTTCCAGTATGCAGGGTACTGATATGTTCCCTAACATGGTACTTCAAATGGCGGC
AATTGGTGAGGAATCTGGTTCATTGGACGGCATGTTGAATAAGGTGGCTGAATTCTATGAAGATGAGGTAGACAATGCCG
TGGCTCAATTATCTTCCTTGATGGAGCCGATAATTATGGTGGTACTTGGCTCAATTATTGGTGTGATCCTTGTTGCTATG
TACTTGCCGTTGTTCAATTTGGGTAACGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

70.244

99.515

0.699
  pilG Neisseria meningitidis 44/76-A

69.756

99.515

0.694
  pilC Legionella pneumophila strain ERS1305867

47.118

96.845

0.456
  pilC Acinetobacter baumannii D1279779

46.985

96.602

0.454
  pilC Acinetobacter baylyi ADP1

46.115

96.845

0.447
  pilC Pseudomonas stutzeri DSM 10701

45.05

98.058

0.442
  pilC Vibrio cholerae strain A1552

38.945

96.602

0.376

Multiple sequence alignment